Microarray Publications Database
Supplementary Data: Table B
The list of 100 top ranking genes (by Fischer score), as determined by SVM (Support Vector Machine).
Those genes which are ranked as both significant by SAM (113 genes) and as a predictor by SVM (100 genes) are denoted with a light grey background.
CloneID | UGCluster | Symbol | Gene Product | CytoBand | Fisher Score |
---|---|---|---|---|---|
823819 | Hs.78050 | SMAP | small acidic protein | 11p15.1 | 5.8424 |
123117 | Hs.372755 | KDELR2 | KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 | 7p22.2 | 3.9196 |
843133 | Hs.122669 | MRPS27 | mitochondrial ribosomal protein S27 | 5q13.1 | 3.7419 |
814095 | Hs.429898 |   | Homo sapiens, Similar to leukotriene A4 hydrolase, clone IMAGE:5266577, mRNA |   | 3.4539 |
827144 | Hs.75574 | MRPL19 | mitochondrial ribosomal protein L19 | 2q11.1-q11.2 | 3.3732 |
1469230 | Hs.433901 | COX8 | cytochrome c oxidase subunit VIII | 11q12-q13 | 3.1063 |
784319 | Hs.285519 |   | Homo sapiens OVN6-2 mRNA, partial cds |   | 2.7129 |
66574 | Hs.432914 |   | Homo sapiens cDNA FLJ25106 fis, clone CBR01467. |   | 2.6973 |
795738 | Hs.433898 | GNG10 | guanine nucleotide binding protein (G protein), gamma 10 | 9q32 | 2.5591 |
897642 | Hs.446504 |   | ESTs, Highly similar to ABL1_HUMAN Proto-oncogene tyrosine-protein kinase ABL1 (p150) (c-ABL) [H.sapiens] |   | 2.4718 |
307933 | Hs.19236 | NDUFB5 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa | 3q27.1 | 2.4379 |
813712 | Hs.81634 | ATP5F1 | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1 | 1p13.1 | 2.4326 |
486607 | Hs.163546 | UBE2E1 | ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast) | 3p24.1 | 2.3016 |
773332 | Hs.851 | ITGAE | integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) | 17p13 | 2.2973 |
647946 | Hs.238990 | CDKN1B | cyclin-dependent kinase inhibitor 1B (p27, Kip1) | 12p13.1-p12 | 2.2875 |
73381 | Hs.76362 | GTF2A2 | general transcription factor IIA, 2, 12kDa | 15q21.3 | 2.2717 |
357031 | Hs.29352 | TNFAIP6 | tumor necrosis factor, alpha-induced protein 6 | 2q23.3 | 2.2661 |
825312 | Hs.73851 | ATP5J | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 | 21q21.1 | 2.1999 |
399318 | Hs.430522 | CSNK2B | casein kinase 2, beta polypeptide | 6p21.3 | 2.1933 |
44255 | Hs.79086 | MRPL3 | mitochondrial ribosomal protein L3 | 3q21-q23 | 2.1402 |
83363 | Hs.79137 | PCMT1 | protein-L-isoaspartate (D-aspartate) O-methyltransferase | 6q24-q25 | 2.1273 |
796759 | Hs.418489 |   | Homo sapiens cDNA FLJ38479 fis, clone FEBRA2022787. |   | 2.1154 |
782439 | Hs.85539 | ATP5I | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit e | 4p16.3 | 2.1030 |
950489 | Hs.75428 | SOD1 | superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult)) | 21q22.11 | 2.0813 |
843094 | Hs.81424 | UBL1 | ubiquitin-like 1 (sentrin) | 2q33 | 2.0640 |
1012799 | Hs.88556 | HDAC1 | histone deacetylase 1 | 1p34 | 1.9998 |
814701 | Hs.79078 | MAD2L1 | MAD2 mitotic arrest deficient-like 1 (yeast) | 4q27 | 1.9901 |
1071516 | Hs.1407 | EDN2 | endothelin 2 | 1p34 | 1.9463 |
853938 | Hs.5120 | DNCL1 | dynein, cytoplasmic, light polypeptide 1 | 12q24.23 | 1.9238 |
23772 | Hs.78788 | LZTR1 | leucine-zipper-like transcriptional regulator, 1 | 22q11.21 | 1.9024 |
433666 | Hs.279919 | RBX1 | ring-box 1 | 22q13.2 | 1.7511 |
74566 | Hs.79090 | XPO1 | exportin 1 (CRM1 homolog, yeast) | 2p16 | 1.7335 |
80374 | Hs.1023 | PDHA1 | pyruvate dehydrogenase (lipoamide) alpha 1 | Xp22.2-p22.1 | 1.6878 |
199403 | Hs.4082 | LGALS8 | lectin, galactoside-binding, soluble, 8 (galectin 8) | 1q42-q43 | 1.6844 |
781366 | Hs.351932 |   | Homo sapiens, clone MGC:22221 IMAGE:4687764, mRNA, complete cds |   | 1.6614 |
725454 | Hs.83758 | CKS2 | CDC28 protein kinase regulatory subunit 2 | 9q22 | 1.6524 |
210887 | Hs.119222 | ST13 | suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) | 22q13.2 | 1.6472 |
273435 | Hs.194148 | YES1 | v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 | 18p11.31-p11.21 | 1.6008 |
773511 | Hs.30792 | HOOK2 | hook2 protein | 19p13.12 | 1.5728 |
665774 |   |   |   |   | 1.5695 |
768377 |   |   |   |   | 1.5629 |
489823 | Hs.16297 | COX17 | COX17 homolog, cytochrome c oxidase assembly protein (yeast) | 3q13.33 | 1.5614 |
295137 | Hs.32042 | ASPA | aspartoacylase (aminoacylase 2, Canavan disease) | 17pter-p13 | 1.5413 |
897177 | Hs.356309 |   | ESTs, Highly similar to PMG1_HUMAN Phosphoglycerate mutase 1 (Phosphoglycerate mutase isozyme B) (PGAM-B) (BPG-dependent PGAM 1) [H.sapiens] |   | 1.5324 |
825470 | Hs.156346 | TOP2A | topoisomerase (DNA) II alpha 170kDa | 17q21-q22 | 1.4840 |
842836 | Hs.183583 | SERPINB1 | serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 1 | 6p25 | 1.4809 |
79688 | Hs.424327 | SNRPD2 | small nuclear ribonucleoprotein D2 polypeptide 16.5kDa | 19q13.2 | 1.4725 |
795936 | Hs.75066 | TSN | translin | 2q21.1 | 1.4549 |
487425 | Hs.29463 | CETN3 | centrin, EF-hand protein, 3 (CDC31 homolog, yeast) | 5q14.3 | 1.4333 |
399604 | Hs.119403 | HEXA | hexosaminidase A (alpha polypeptide) | 15q23-q24 | 1.4152 |
767277 | Hs.9880 | PPIH | peptidyl prolyl isomerase H (cyclophilin H) | 1p34.1 | 1.4105 |
739993 | Hs.80426 | BRE | brain and reproductive organ-expressed (TNFRSF1A modulator) | 2p23.3 | 1.4007 |
813742 |   |   |   |   | 1.3533 |
843067 | Hs.154970 | TFCP2 | transcription factor CP2 | 12q13 | 1.3357 |
245853 | Hs.74626 | AP2B1 | adaptor-related protein complex 2, beta 1 subunit | 17q11.2-q12 | 1.3302 |
813983 | Hs.6076 | COPS3 | COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis) | 17p11.2 | 1.3274 |
133637 | Hs.155637 | PRKDC | protein kinase, DNA-activated, catalytic polypeptide | 8q11 | 1.3240 |
327350 | Hs.232400 | HNRPA2B1 | heterogeneous nuclear ribonucleoprotein A2/B1 | 7p15 | 1.3176 |
788109 | Hs.77613 | ATR | ataxia telangiectasia and Rad3 related | 3q22-q24 | 1.3132 |
757144 |   |   |   |   | 1.3023 |
41940 |   |   |   |   | 1.3006 |
211206 | Hs.124 | CMT2 | gene predicted from cDNA with a complete coding sequence | 6p21.1 | 1.2932 |
260303 | Hs.395762 |   | Homo sapiens cDNA FLJ20528 fis, clone KAT10770. |   | 1.2861 |
264640 | Hs.380749 | CLTB | clathrin, light polypeptide (Lcb) | 5q35 | 1.2798 |
838744 | Hs.25732 | EIF4G3 | eukaryotic translation initiation factor 4 gamma, 3 | 1p36.12 | 1.2753 |
193106 | Hs.429 | ATP5G3 | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3 | 2q31.1 | 1.2695 |
150314 | Hs.12540 | LYPLA1 | lysophospholipase I | 8q11.23 | 1.2361 |
878130 | Hs.180139 | SMT3H2 | SMT3 suppressor of mif two 3 homolog 2 (yeast) | 17q25.2 | 1.2273 |
487373 | Hs.80986 | ATP5G1 | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 | 17q21.32 | 1.2127 |
843426 | Hs.288906 | SAV1 | salvador homolog 1 (Drosophila) | 14q13-q23 | 1.2059 |
796096 | Hs.84318 | RPA1 | replication protein A1, 70kDa | 17p13.3 | 1.2004 |
812167 | Hs.87726 | GGA3 | golgi associated, gamma adaptin ear containing, ARF binding protein 3 | 17q25.2 | 1.1907 |
278501 | Hs.169370 | FYN | FYN oncogene related to SRC, FGR, YES | 6q21 | 1.5929 |
526291 | Hs.406683 | RPS15 | ribosomal protein S15 | 19p13.3 | 1.5754 |
824352 | Hs.404283 | RAD23B | RAD23 homolog B (S. cerevisiae) | 9q31.2 | 1.5752 |
1476053 | Hs.343807 | RAD51 | RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) | 15q15.1 | 1.1858 |
342640 | Hs.81892 | KIAA0101 | KIAA0101 gene product | 15q22.1 | 1.1810 |
299388 | Hs.151734 | NUTF2 | nuclear transport factor 2 | 16q22.1 | 1.1758 |
785967 | Hs.7857 | EPB41L2 | erythrocyte membrane protein band 4.1-like 2 | 6q23 | 1.1712 |
322914 | Hs.75393 | ACP1 | acid phosphatase 1, soluble | 2p25 | 1.1579 |
1472753 | Hs.380975 |   | ESTs, Highly similar to S12566 translation initiation factor eIF-4B - human [H.sapiens] |   | 1.1529 |
1325816 | Hs.441072 | POLR2L | polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa | 11p15 | 1.1485 |
5668871 |   |   | ESTs |   | 1.1447 |
80410 | Hs.335918 | FDPS | farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) | 1q21.3 | 1.1400 |
75415 | Hs.256697 | HINT1 | histidine triad nucleotide binding protein 1 | 5q31.2 | 1.1386 |
165857 | Hs.153687 | INPP4B | inositol polyphosphate-4-phosphatase, type II, 105kDa | 4q31.1 | 1.1320 |
781704 | Hs.77558 | HMGN3 | high mobility group nucleosomal binding domain 3 | 6q14.2 | 1.1293 |
130242 | Hs.184298 | CDK7 | cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase) | 5q12.1 | 1.1261 |
244703 | Hs.82582 | ITGBL1 | integrin, beta-like 1 (with EGF-like repeat domains) | 13q33 | 1.1062 |
826204 | Hs.83849 | FLII | flightless I homolog (Drosophila) | 17p11.2 | 1.0993 |
143523 | Hs.146428 | COL5A1 | collagen, type V, alpha 1 | 9q34.2-q34.3 | 1.0915 |
772261 | Hs.79107 | MAPK14 | mitogen-activated protein kinase 14 | 6p21.3-p21.2 | 1.0913 |
52629 | Hs.184402 | CAMK1 | calcium/calmodulin-dependent protein kinase I | 3p25.3 | 1.0879 |
271744 | Hs.115263 | EREG | epiregulin | 4q21.1 | 1.0876 |
773554 | Hs.289043 | SPIN | spindlin | 9q22.1-q22.3 | 1.0876 |
47542 | Hs.86948 | SNRPD1 | small nuclear ribonucleoprotein D1 polypeptide 16kDa | 18q11.1 | 1.0874 |
127925 | Hs.100555 | DDX18 | DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 18 (Myc-regulated) | 2q14.1 | 1.0639 |
795847 | Hs.380969 | COPS5 | COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) | 8q12.3 | 1.0630 |
361899 | Hs.237786 | ZNF187 | zinc finger protein 187 | 6p21.31 | 1.0586 |
489489 | Hs.152931 | LBR | lamin B receptor | 1q42.1 | 1.0545 |