Microarray Publications Database
Supplementary Data: Table A
The list of 113 genes found to be significant by SAM (Significance Analysis of Microarrays) at 20% FDR (False Discovery Rate).
For the 47 highest ranking genes (10% FDR), the Score and Fold change are denoted with a yellow background.
Those genes which are ranked as both significant by SAM (113 genes) and as a predictor by SVM (100 genes) are denoted with a light grey background.
CloneID | UGCluster | Symbol | Gene Product | CytoBand | Score (d) | Fold change |
---|---|---|---|---|---|---|
823819 | Hs.78050 | SMAP | small acidic protein | 11p15.1 | 4.78516 | 1.69828 |
843133 | Hs.122669 | MRPS27 | mitochondrial ribosomal protein S27 | 5q13.1 | 3.99847 | 1.40572 |
827144 | Hs.75574 | MRPL19 | mitochondrial ribosomal protein L19 | 2q11.1-q11.2 | 3.83223 | 1.79551 |
814095 | Hs.429898 |   | Homo sapiens, Similar to leukotriene A4 hydrolase, clone IMAGE:5266577, mRNA |   | 3.79265 | 1.97152 |
1469230 | Hs.433901 | COX8 | cytochrome c oxidase subunit VIII | 11q12-q13 | 3.65874 | 1.58673 |
773332 | Hs.851 | ITGAE | integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) | 17p13 | 3.64250 | 1.49709 |
795738 | Hs.433898 | GNG10 | guanine nucleotide binding protein (G protein), gamma 10 | 9q32 | 3.47859 | 1.67321 |
307933 | Hs.19236 | NDUFB5 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa | 3q27.1 | 3.37038 | 1.57401 |
784319 | Hs.285519 |   | Homo sapiens OVN6-2 mRNA, partial cds |   | 3.25852 | 1.64362 |
73381 | Hs.76362 | GTF2A2 | general transcription factor IIA, 2, 12kDa | 15q21.3 | 3.24233 | 1.36056 |
486607 | Hs.163546 | UBE2E1 | ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast) | 3p24.1 | 3.23489 | 1.78391 |
950489 | Hs.75428 | SOD1 | superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult)) | 21q22.11 | 3.21874 | 1.44769 |
83363 | Hs.79137 | PCMT1 | protein-L-isoaspartate (D-aspartate) O-methyltransferase | 6q24-q25 | 3.11006 | 1.52849 |
647946 | Hs.238990 | CDKN1B | cyclin-dependent kinase inhibitor 1B (p27, Kip1) | 12p13.1-p12 | 3.08147 | 1.69312 |
399318 | Hs.430522 | CSNK2B | casein kinase 2, beta polypeptide | 6p21.3 | 3.02082 | 1.38805 |
825312 | Hs.73851 | ATP5J | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 | 21q21.1 | 3.01438 | 1.49224 |
813712 | Hs.81634 | ATP5F1 | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1 | 1p13.1 | 2.98409 | 1.90740 |
843094 | Hs.81424 | UBL1 | ubiquitin-like 1 (sentrin) | 2q33 | 2.97665 | 1.37038 |
487425 | Hs.29463 | CETN3 | centrin, EF-hand protein, 3 (CDC31 homolog, yeast) | 5q14.3 | 2.96548 | 2.03496 |
1071516 | Hs.1407 | EDN2 | endothelin 2 | 1p34 | 2.91963 | 1.68051 |
853938 | Hs.5120 | DNCL1 | dynein, cytoplasmic, light polypeptide 1 | 12q24.23 | 2.90804 | 1.85730 |
273435 | Hs.194148 | YES1 | v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 | 18p11.31-p11.21 | 2.90016 | 1.54590 |
44255 | Hs.79086 | MRPL3 | mitochondrial ribosomal protein L3 | 3q21-q23 | 2.87514 | 1.25596 |
74566 | Hs.79090 | XPO1 | exportin 1 (CRM1 homolog, yeast) | 2p16 | 2.82187 | 1.81713 |
842836 | Hs.183583 | SERPINB1 | serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 1 | 6p25 | 2.79294 | 1.55771 |
782439 | Hs.85539 | ATP5I | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit e | 4p16.3 | 2.78814 | 1.65932 |
712641 |   |   |   |   | 2.76932 | 1.44379 |
796759 | Hs.418489 |   | Homo sapiens cDNA FLJ38479 fis, clone FEBRA2022787. |   | 2.74966 | 1.71710 |
772261 | Hs.79107 | MAPK14 | mitogen-activated protein kinase 14 | 6p21.3-p21.2 | 2.72654 | 1.28580 |
199403 | Hs.4082 | LGALS8 | lectin, galactoside-binding, soluble, 8 (galectin 8) | 1q42-q43 | 2.72494 | 1.68184 |
711768 | Hs.76057 | GALE | galactose-4-epimerase, UDP- | 1p36-p35 | 2.72364 | 1.31732 |
433666 | Hs.279919 | RBX1 | ring-box 1 | 22q13.2 | 2.72338 | 1.37735 |
781366 | Hs.351932 |   | Homo sapiens, clone MGC:22221 IMAGE:4687764, mRNA, complete cds |   | 2.68119 | 1.48563 |
768377 |   |   |   |   | 2.67202 | 1.46839 |
725454 | Hs.83758 | CKS2 | CDC28 protein kinase regulatory subunit 2 | 9q22 | 2.67126 | 2.41041 |
295137 | Hs.32042 | ASPA | aspartoacylase (aminoacylase 2, Canavan disease) | 17pter-p13 | 2.65786 | 1.42662 |
825470 | Hs.156346 | TOP2A | topoisomerase (DNA) II alpha 170kDa | 17q21-q22 | 2.64570 | 1.65888 |
487777 | Hs.75770 | RB1 | retinoblastoma 1 (including osteosarcoma) | 13q14.2 | 2.63615 | 1.61534 |
210887 | Hs.119222 | ST13 | suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) | 22q13.2 | 2.61935 | 1.63352 |
824352 | Hs.404283 | RAD23B | RAD23 homolog B (S. cerevisiae) | 9q31.2 | 2.61480 | 1.90168 |
344672 | Hs.15536 | DKFZp761J139 | hypothetical protein DKFZp761J139 | 5q14.1 | 2.61037 | 1.50462 |
52629 | Hs.184402 | CAMK1 | calcium/calmodulin-dependent protein kinase I | 3p25.3 | 2.59532 | 1.62138 |
665774 |   |   |   |   | 2.58914 | 1.87687 |
210887 | Hs.119222 | ST13 | suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) | 22q13.2 | 2.57951 | 1.44886 |
773511 | Hs.30792 | HOOK2 | hook2 protein | 19p13.12 | 2.56175 | 1.70345 |
41940 |   |   |   |   | 2.51113 | 1.33784 |
878130 | Hs.180139 | SMT3H2 | SMT3 suppressor of mif two 3 homolog 2 (yeast) | 17q25.2 | 2.50856 | 1.50614 |
757144 |   |   |   |   | 2.47338 | 1.51086 |
50614 | Hs.79008 | SNW1 | SKI-interacting protein | 14q24.3 | 2.45003 | 1.59202 |
767277 | Hs.9880 | PPIH | peptidyl prolyl isomerase H (cyclophilin H) | 1p34.1 | 2.44531 | 1.55297 |
739993 | Hs.80426 | BRE | brain and reproductive organ-expressed (TNFRSF1A modulator) | 2p23.3 | 2.39065 | 1.43349 |
80374 | Hs.1023 | PDHA1 | pyruvate dehydrogenase (lipoamide) alpha 1 | Xp22.2-p22.1 | 2.37745 | 1.21025 |
51737 | Hs.29287 | RBBP8 | retinoblastoma binding protein 8 | 18q11.2 | 2.37304 | 1.42344 |
788109 | Hs.77613 | ATR | ataxia telangiectasia and Rad3 related | 3q22-q24 | 2.37002 | 1.32052 |
795936 | Hs.75066 | TSN | translin | 2q21.1 | 2.36255 | 1.58357 |
75415 | Hs.256697 | HINT1 | histidine triad nucleotide binding protein 1 | 5q31.2 | 2.34316 | 1.38552 |
327350 | Hs.232400 | HNRPA2B1 | heterogeneous nuclear ribonucleoprotein A2/B1 | 7p15 | 2.33657 | 1.60906 |
133637 | Hs.155637 | PRKDC | protein kinase, DNA-activated, catalytic polypeptide | 8q11 | 2.33529 | 1.44047 |
284620 |   |   |   |   | 2.32378 | 1.65846 |
489489 | Hs.152931 | LBR | lamin B receptor | 1q42.1 | 2.32022 | 1.85195 |
1012799 | Hs.88556 | HDAC1 | histone deacetylase 1 | 1p34 | 2.30982 | 1.33046 |
130242 | Hs.184298 | CDK7 | cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase) | 5q12.1 | 2.30974 | 1.43695 |
150314 | Hs.12540 | LYPLA1 | lysophospholipase I | 8q11.23 | 2.30525 | 1.50815 |
838744 | Hs.25732 | EIF4G3 | eukaryotic translation initiation factor 4 gamma, 3 | 1p36.12 | 2.30412 | 3.29575 |
79688 | Hs.424327 | SNRPD2 | small nuclear ribonucleoprotein D2 polypeptide 16.5kDa | 19q13.2 | 2.28477 | 1.24820 |
810506 | Hs.166684 | STK3 | serine/threonine kinase 3 (STE20 homolog, yeast) | 8q22.1 | 2.28276 | 1.61445 |
839980 | Hs.132760 | G6PT1 | glucose-6-phosphatase, transport (glucose-6-phosphate) protein 1 | 11q23.3 | 2.28226 | 1.54840 |
260303 | Hs.395762 |   | Homo sapiens cDNA FLJ20528 fis, clone KAT10770. |   | 2.28132 | 1.97982 |
897177 | Hs.356309 |   | ESTs, Highly similar to PMG1_HUMAN Phosphoglycerate mutase 1 (Phosphoglycerate mutase isozyme B) (PGAM-B) (BPG-dependent PGAM 1) [H.sapiens] |   | 2.26367 | 1.31953 |
298612 | Hs.155174 | CDC5L | CDC5 cell division cycle 5-like (S. pombe) | 6p21 | 2.25878 | 1.39212 |
897952 | Hs.76913 | PSMA5 | proteasome (prosome, macropain) subunit, alpha type, 5 | 1p13 | 2.24825 | 1.54968 |
785967 | Hs.7857 | EPB41L2 | erythrocyte membrane protein band 4.1-like 2 | 6q23 | 2.24696 | 1.54604 |
843426 | Hs.288906 | SAV1 | salvador homolog 1 (Drosophila) | 14q13-q23 | 2.24345 | 1.51373 |
978715 | Hs.334842 | K-ALPHA-1 | tubulin, alpha, ubiquitous | 12q13.11 | 2.24002 | 1.91622 |
813983 | Hs.6076 | COPS3 | COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis) | 17p11.2 | 2.23980 | 1.41126 |
789204 | Hs.8146 | TLOC1 | translocation protein 1 | 3q26.2-q27 | 2.23704 | 1.46574 |
193106 | Hs.429 | ATP5G3 | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3 | 2q31.1 | 2.23465 | 1.40084 |
299388 | Hs.151734 | NUTF2 | nuclear transport factor 2 | 16q22.1 | 2.23434 | 1.32385 |
322914 | Hs.75393 | ACP1 | acid phosphatase 1, soluble | 2p25 | 2.22598 | 1.46930 |
80410 | Hs.335918 | FDPS | farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) | 1q21.3 | 2.21891 | 1.49347 |
487373 | Hs.80986 | ATP5G1 | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 | 17q21.32 | 2.21811 | 1.47945 |
566887 | Hs.406384 | CBX3 | chromobox homolog 3 (HP1 gamma homolog, Drosophila) | 7p15.2 | 2.21360 | 1.61518 |
1472753 | Hs.380975 |   | ESTs, Highly similar to S12566 translation initiation factor eIF-4B - human [H.sapiens] |   | 2.20733 | 1.96952 |
1476053 | Hs.343807 | RAD51 | RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) | 15q15.1 | 2.20688 | 1.99536 |
42076 | Hs.250897 | TFG | TRK-fused gene | 3q11-q12 | 2.19239 | 1.32595 |
781704 | Hs.77558 | HMGN3 | high mobility group nucleosomal binding domain 3 | 6q14.2 | 2.19068 | 1.52126 |
812167 | Hs.87726 | GGA3 | golgi associated, gamma adaptin ear containing, ARF binding protein 3 | 17q25.2 | 2.17749 | 1.35774 |
825214 | Hs.201676 | MPHOSPH10 | M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) | 2p12 | 2.17060 | 1.32741 |
746232 | Hs.194035 | C14orf92 | chromosome 14 open reading frame 92 | 14q11.1 | 2.16896 | 1.28768 |
795847 | Hs.380969 | COPS5 | COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) | 8q12.3 | 2.15501 | 1.47435 |
796096 | Hs.84318 | RPA1 | replication protein A1, 70kDa | 17p13.3 | 2.15114 | 1.30242 |
309970 | Hs.758 | RASA1 | RAS p21 protein activator (GTPase activating protein) 1 | 5q13.3 | 2.13836 | 1.25243 |
898253 | Hs.79088 | RCN2 | reticulocalbin 2, EF-hand calcium binding domain | 15q23 | 2.13321 | 1.30781 |
342640 | Hs.81892 | KIAA0101 | KIAA0101 gene product | 15q22.1 | 2.12870 | 3.80001 |
666121 | Hs.115176 | TIAM1 | T-cell lymphoma invasion and metastasis 1 | 21q22.11 | 2.11384 | 1.44428 |
140100 | Hs.239218 | LOC55862 | uncharacterized hypothalamus protein HCDASE | 6q22.33 | 2.10874 | 1.30363 |
40017 |   |   |   |   | 2.10700 | 1.55070 |
127925 | Hs.100555 | DDX18 | DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 18 (Myc-regulated) | 2q14.1 | 2.10504 | 1.36706 |
684879 | Hs.69089 | GLA | galactosidase, alpha | Xq22 | 2.10414 | 1.67382 |
47542 | Hs.86948 | SNRPD1 | small nuclear ribonucleoprotein D1 polypeptide 16kDa | 18q11.1 | 2.10293 | 1.50589 |
526945 |   |   |   |   | 2.10025 | 1.74967 |
725188 | Hs.75375 | MDH1 | malate dehydrogenase 1, NAD (soluble) | 2p13.3 | 2.09774 | 1.58513 |
814701 | Hs.79078 | MAD2L1 | MAD2 mitotic arrest deficient-like 1 (yeast) | 4q27 | 2.09664 | 1.65590 |
950578 | Hs.83916 | NDUFA5 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa | 7q32 | 2.09555 | 1.36519 |
267634 |   |   |   |   | 2.09376 | 1.30988 |
841370 | Hs.170197 | GOT2 | glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) | 16q21 | 2.08758 | 1.43663 |
271744 | Hs.115263 | EREG | epiregulin | 4q21.1 | 2.08686 | 1.34428 |
725680 | Hs.61796 | TFAP2C | transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) | 20q13.2 | 2.08596 | 1.72408 |
32257 | Hs.75975 | SRP9 | signal recognition particle 9kDa | 1q42.13 | 2.08031 | 1.38087 |
773554 | Hs.289043 | SPIN | spindlin | 9q22.1-q22.3 | 2.07435 | 1.32607 |
785778 |   |   |   |   | 2.07044 | 1.39851 |
814119 | Hs.171872 | DDX8 | DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 8 (RNA helicase) | 17q21.31 | 2.06963 | 1.33707 |
52629 | Hs.184402 | CAMK1 | calcium/calmodulin-dependent protein kinase I | 3p25.3 | 2.06741 | 1.31389 |