Microarray Publications Database
Supplementary Data: Table 2C
Top 200 genes which discriminate between BRCA1 & BRCA2 genotypes by SVM.
p Value | CloneID | Description | Locus | CytoBand |
---|---|---|---|---|
0.00000004607 | 137645 | Full length insert cDNA YH97B03 |   |   |
0.0000001373 | 126739 | NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa | NDUFV2 | 18p11.31-p11.2 |
0.0000007202 | 28442 | FYN oncogene related to SRC, FGR, YES | FYN | 6q21 |
0.000000856 | 743828 | IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, |   |   |
0.0000009463 | 137790 | Rho-related BTB domain containing 1 | RHOBTB1 | 10q21.2 |
0.000001602 | 177363 | Chromosome 16 open reading frame 5 | C16orf5 | 16p13.3 |
0.000002372 | 165908 | Transcription factor-like 1 | TCFL1 | 1q21 |
0.000002859 | 364825 |   |   |   |
0.000003242 | 229734 | Hypothetical protein BC015088 | MGC16471 | 3p25.2 |
0.000003692 | 190200 | Spindlin | SPIN | 9q22.1-q22.3 |
0.000003986 | 267778 | MYST histone acetyltransferase 1 | MYST1 | 16p11.2 |
0.000004207 | 2296286 | ATP synthase, H+ transporting, mitochondrial F1 complex, | ATP5E | 20q13.32 |
0.000004277 | 1391653 | KIAA0792 | KIAA0792 | 1q42.12 |
0.000005104 | 297430 | Cyclin-dependent kinase inhibitor 1B (p27, Kip1) | CDKN1B | 12p13.1-p12 |
0.000006437 | 124168 | Transcribed locus |   |   |
0.000006781 | 322759 | Small nuclear RNA activating complex, polypeptide 5, 19kDa | SNAPC5 | 15q22.31 |
0.000006852 | 926259 | Solute carrier organic anion transporter family, member 4A1 | SLCO4A1 | 20q13.33 |
0.000007367 | 1186121 | CDNA FLJ12676 fis, clone NT2RM4002383 |   |   |
0.000007569 | 125300 | Hypothetical protein MGC4308 | MGC4308 | 3q12.1 |
0.000007647 | 138430 | Hypothetical protein LOC286505 | AMMECR1 | Xq22.3 |
0.000008746 | 167041 | ATP-binding cassette, sub-family B (MDR/TAP), member 8 | ABCB8 | 7q36 |
0.00000884 | 1185901 | BTB and CNC homology 1, basic leucine zipper transcription factor 2 | BACH2 | 6q15 |
0.000009026 | 345561 | Pim-1 oncogene | PIM1 | 6p21.2 |
0.000009419 | 743085 | WD repeat domain 57 (U5 snRNP specific) | HPRP8BP | 1p35.2 |
0.00001032 | 135500 | Solute carrier family 7 (cationic amino acid transporter, y+ system), | SLC7A2 | 8p22-p21.3 |
0.00001119 | 1642453 | CCCTC-binding factor (zinc finger protein)-like | CTCFL | 20q13.31 |
0.00001129 | 43071 | CLIP-170-related protein | CLIPR-59 | 19q13.12 |
0.00001129 | 35093 | Dual specificity phosphatase 14 | DUSP14 | 17q12 |
0.00001198 | 727981 | CAMP responsive element binding protein 3-like 4 | CREB3L4 | 1q21.3 |
0.00001302 | 1620974 | Chromosome 21 open reading frame 119 | C21orf119 | 21q22.11 |
0.00001328 | 814306 | Tumor protein D52 | TPD52 | 8q21 |
0.00001341 | 753931 | Chemokine (C-X-C motif) receptor 4 | CXCR4 | 2q21 |
0.00001429 | 39007 | Solute carrier family 9 (sodium/hydrogen exchanger), isoform 6 | SLC9A6 | Xq26.3 |
0.00001477 | 125699 |   |   |   |
0.00001522 | 1472743 | Lectin, galactoside-binding, soluble, 2 (galectin 2) | LGALS2 | 22q12-q13 |
0.00001911 | 728065 |   |   |   |
0.00002133 | 1585013 | Chromosome 16 open reading frame 28 | C16orf28 | 16p13.3 |
0.00002287 | 294283 | Ras association (RalGDS/AF-6) domain family 5 | RASSF5 | 1q32.1 |
0.00002321 | 297158 | CAMP responsive element binding protein 3-like 2 | CREB3L2 | 7q34 |
0.00002504 | 1251833 | Nei endonuclease VIII-like 3 (E. coli) | FLJ10858 | 4q34.3 |
0.00002515 | 177794 | Rhomboid family 1 (Drosophila) | RHBDF1 | 16p13.3 |
0.0000259 | 172421 | Transforming growth factor, alpha | TGFA | 2p13 |
0.00002609 | 165853 | Hypothetical protein FLJ36445 | FLJ36445 | 19q13.12 |
0.0000295 | 381728 | Myotubularin related protein 9 | MTMR9 | 8p23-p22 |
0.00002962 | 66550 | Tetratricopeptide repeat domain 17 | TTC17 | 11p12-p11.2 |
0.00002975 | 173169 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, | SMARCA4 | 19p13.2 |
0.00003078 | 724339 | CDNA clone IMAGE:6250506 |   |   |
0.00003294 | 307092 | HCF-binding transcription factor Zhangfei | ZF | 11q14 |
0.0000331 | 2338773 | Forkhead box A1 | FOXA1 | 14q12-q13 |
0.00003325 | 247082 | Hypothetical protein LOC149705 | C20orf121 | 20q13.12 |
0.00003599 | 742889 | Transcribed locus, strongly similar to XP_511341.1 |   |   |
0.00004157 | 120146 | Adenosine monophosphate deaminase (isoform E) | AMPD3 | 11p15 |
0.00004179 | 767090 | KIAA0286 protein | KIAA0286 | 12q13.3 |
0.00004203 | 759917 | Centromere protein C 1 | CENPC1 | 4q12-q13.3 |
0.00004444 | 111192 | Cytochrome c oxidase subunit VIc | COX6C | 8q22-q23 |
0.00004993 | 230988 | E2F transcription factor 3 | E2F3 | 6p22 |
0.00005048 | 774198 | Cell division cycle 26 | KIAA0828 | 7q32.3 |
0.00005369 | 1030234 | Ubiquitin carboxyl-terminal hydrolase L5 | UCHL5 | 1q32 |
0.00005432 | 123730 | Src family associated phosphoprotein 1 | SCAP1 | 17q21.32 |
0.00005575 | 1678376 | Protein phosphatase 1, regulatory (inhibitor) subunit 15B | PPP1R15B | 1q32.1 |
0.00005598 | 25227 | Hepatocyte growth factor (hepapoietin A; scatter factor) | HGF | 7q21.1 |
0.00005612 | 2310900 | Cas-Br-M (murine) ecotropic retroviral transforming sequence | CBL | 11q23.3 |
0.00005854 | 729937 | KIAA0907 protein | KIAA0907 | 1q22 |
0.00006001 | 300868 | Poly(A) binding protein, nuclear 1 | PABPN1 | 14q11.2-q13 |
0.00006139 | 760147 | Glyceronephosphate O-acyltransferase | GNPAT | 1q42.11-42.3 |
0.00006395 | 120599 | Breast carcinoma amplified sequence 3 | BCAS3 | 17q23 |
0.00006426 | 756245 |   |   |   |
0.00006442 | 110220 | Homo sapiens, clone IMAGE:3621928 |   |   |
0.00006625 | 1033710 | Phosphatidic acid phosphatase type 2A | PPAP2A | 5q11 |
0.00006784 | 346315 | Hypothetical protein H17 | H17 | 11q24.2 |
0.00007118 | 124148 | Ataxin 1 | LOC360030 | 12p13.31 |
0.00007292 | 194401 | KIAA0146 protein | KIAA0146 | 8q11.21 |
0.00007528 | 123416 |   |   |   |
0.00007925 | 126274 | Full length insert cDNA clone ZE04G11 |   |   |
0.00008154 | 739191 | Zinc finger protein 261 | ZNF261 | Xq13.1 |
0.00008305 | 375839 | Glucocorticoid induced transcript 1 | GLCCI1 | 7p21.3 |
0.00008336 | 713328 | Zinc finger protein 337 | ZNF337 | 20p11.21 |
0.00008493 | 109699 | Zinc finger, DHHC-type containing 16 | ZDHHC16 | 10q24.1 |
0.00008508 | 815113 | MGC4707 protein | MGC4707 | 11p11.2 |
0.0000863 | 1620366 | Transcribed locus |   |   |
0.00008937 | 754257 | DnaJ (Hsp40) homolog, subfamily A, member 3 | DNAJA3 | 16p13.3 |
0.00009403 | 309368 | Ankyrin repeat domain 17 | ANKRD17 | 4q13.3 |
0.00009406 | 122885 |   |   |   |
0.0001004 | 754178 | Inhibitor of kappa light polypeptide gene enhancer in B-cells, | IKBKAP | 9q31 |
0.0001007 | 1561589 | Similar to RIKEN cDNA 1700025K23 |   | 1p35.1 |
0.0001011 | 1409762 | Serine (or cysteine) proteinase inhibitor, clade A | SERPINA2 | 14q32.13 |
0.0001019 | 723775 | Small nuclear ribonucleoprotein polypeptides B and B1 | SNRPB | 20p13 |
0.000102 | 1645979 | Transcribed locus |   |   |
0.0001104 | 327351 | Zinc finger protein 85 (HPF4, HTF1) | ZNF85 | 19p13.1-p12 |
0.0001125 | 120460 | Chromosome 11 open reading frame 1 | C11orf1 | 11q13-q22 |
0.0001131 | 1392894 | Transcribed locus, strongly similar to XP_524479.1 |   |   |
0.0001174 | 133323 | Lipoma HMGIC fusion partner | LHFP | 13q12 |
0.0001243 | 124726 | SEC13-like 1 (S. cerevisiae) | SEC13L1 | 3p25-p24 |
0.0001298 | 144928 | Intracisternal A particle-promoted polypeptide | IPP | 1p34-p32 |
0.0001304 | 342232 | CDNA FLJ14188 fis, clone NT2RP2005980 |   |   |
0.000135 | 197975 |   |   |   |
0.0001352 | 148134 |   |   |   |
0.0001369 | 241975 | Ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) | UBE2H | 7q32 |
0.0001381 | 753991 | MOCO sulphurase C-terminal domain containing 1 | FLJ22390 | 1q41 |
0.0001386 | 149744 | Establishment of cohesion 1 homolog 1 (S. cerevisiae) | ESCO1 | 18q11.2 |
0.0001393 | 234212 | Apolipoprotein H (beta-2-glycoprotein I) | APOH | 17q23-qter |
0.0001412 | 261726 | Zinc finger protein 277 | ZNF277 | 7q31.1 |
0.0001431 | 1460923 | Huntingtin interacting protein B | HYPB | 3p21.31 |
0.0001433 | 770879 | CD320 antigen | 8D6A | 19p13.3-p13.2 |
0.0001454 | 244299 | Transcribed locus, moderately similar to XP_496299.1 |   |   |
0.0001547 | 1554230 | Transcribed locus, strongly similar to XP_531118.1 |   |   |
0.0001604 | 108845 | Hypothetical protein BC011266 | LOC93556 | 3q26.2 |
0.0001623 | 755606 | InaD-like (Drosophila) | INADL | 1p31.3 |
0.0001665 | 2405186 | Cytochrome P450, family 4, subfamily F, polypeptide 11 | CYP4F11 | 19p13.1 |
0.0001717 | 2307119 | Inositol polyphosphate-4-phosphatase, type I, 107kDa | INPP4A | 2q11.2 |
0.0001718 | 211086 | CDNA FLJ12202 fis, clone MAMMA1000908 |   |   |
0.0001784 | 179888 | Solute carrier family 8 (sodium-calcium exchanger), member 2 | SLC8A2 | 19q13.3 |
0.0001814 | 756885 | Hypothetical protein BC002926 | LOC90379 | 19p13.12 |
0.0001818 | 33941 | Protein tyrosine phosphatase, receptor type, N | PTPRN | 2q35-q36.1 |
0.0001834 | 795750 | Hypothetical protein MGC9850 | MGC9850 | 13q12.2 |
0.0001837 | 29310 | Chromosome 13 open reading frame 7 | C13orf7 | 13q31.1 |
0.0001853 | 299445 | Transcribed locus, moderately similar to XP_517655.1 |   |   |
0.0001908 | 243964 | SH3 domain binding glutamic acid-rich protein like | SH3BGRL | Xq13.3 |
0.0002025 | 1723100 | Transcribed locus |   |   |
0.0002053 | 727139 | CAMP responsive element binding protein 1 | CREB1 | 2q34 |
0.0002069 | 757192 | Sideroflexin 2 | SFXN2 | 10q24.32 |
0.0002104 | 741035 | Coronin, actin binding protein, 2A | CORO2A | 9q22.3 |
0.0002172 | 111549 | Splicing factor, arginine/serine-rich 11 | SFRS11 | 1p31 |
0.0002223 | 121476 | RNA binding protein with multiple splicing | RBPMS | 8p12-p11 |
0.0002223 | 242009 | Cytochrome P450, family 3, subfamily A, polypeptide 7 | CYP3A7 | 7q21-q22.1 |
0.0002225 | 1645287 | Signal transducer and activator of transcription 5B | STAT5B | 17q11.2 |
0.0002227 | 135094 |   |   |   |
0.0002231 | 740576 | FCH domain only 1 | FCHO1 | 19p13.11 |
0.0002239 | 137982 | Syntaxin 16 | STX16 | 20q13.32 |
0.0002279 | 142431 | Chromosome 2 open reading frame 3 | C2orf3 | 2p11.2-p11.1 |
0.0002313 | 159285 | Hypothetical protein LOC144501 | LOC144501 | 12q13.13 |
0.0002333 | 758200 | Hypothetical protein LOC254559 | LOC254559 | 15q25.3 |
0.000237 | 126534 | KIAA0882 protein | KIAA0882 | 4q31.21 |
0.0002489 | 41995 | Phosphoglycerate dehydrogenase like 1 | PHGDHL1 | 13q32.3 |
0.0002519 | 1519748 | Phosphogluconate dehydrogenase | PGD | 1p36.3-p36.13 |
0.0002563 | 202010 | Palmitoyl-protein thioesterase 2 | PPT2 | 6p21.3 |
0.0002585 | 241051 | Guanosine monophosphate reductase 2 | GMPR2 | 14q11.2 |
0.0002652 | 108671 | WD repeat domain 1 | WDR1 | 4p16.1 |
0.0002664 | 123212 | PAP associated domain containing 4 | PAPD4 | 5q14.1 |
0.0002751 | 247281 | Bromodomain adjacent to zinc finger domain, 2B | BAZ2B | 2q23-q24 |
0.0002763 | 346910 | Succinate-CoA ligase, GDP-forming, beta subunit | SUCLG2 | 3p14.1 |
0.0002814 | 252515 | Kynureninase (L-kynurenine hydrolase) | KYNU | 2q22.3 |
0.0002877 | 768046 | Paternally expressed 10 | PEG10 | 7q21 |
0.0002903 | 810546 | Chromosome 20 open reading frame 75 | C20orf75 | 20p12.3 |
0.0002941 | 125211 | 5,10-methylenetetrahydrofolate reductase (NADPH) | MTHFR | 1p36.3 |
0.0003024 | 2353276 | Chemokine (C-C motif) ligand 20 | CCL20 | 2q33-q37 |
0.000306 | 1707578 |   |   |   |
0.0003089 | 40959 | Solute carrier family 25 (mitochondrial carrier; | SLC25A5 | Xq24-q26 |
0.0003106 | 47361 | Hypothetical protein BC007706 | LOC90268 | 5p15.2 |
0.0003164 | 813628 | Sodium channel, voltage-gated, type II, beta | SCN2B | 11q23 |
0.0003224 | 1032836 | Zinc finger protein 253 | LOC114977 | 19p13.11 |
0.0003238 | 42560 | Kelch-like 9 (Drosophila) | KLHL9 | 9p22 |
0.0003262 | 40647 | Rho guanine nucleotide exchange factor (GEF) 1 | ARHGEF1 | 19q13.13 |
0.0003414 | 193533 | WD repeat domain 57 (U5 snRNP specific) | HPRP8BP | 1p35.2 |
0.0003469 | 198528 | Transcribed locus, weakly similar to XP_517454.1 |   |   |
0.000348 | 258404 | Solute carrier family 6, member 15 | SLC6A15 | 12q21.3 |
0.0003522 | 229726 | Myeloid/lymphoid or mixed-lineage leukemia | MLLT10 | 10p12 |
0.0003657 | 728613 | Importin 4 | IPO4 | 14q11.2 |
0.0003657 | 1588773 | Fascin homolog 3, actin-bundling protein, testicular ( | FSCN3 | 7q31.3 |
0.0003728 | 297963 |   |   |   |
0.000382 | 246820 | CDNA clone IMAGE:6271971, containing frame-shift errors |   |   |
0.0003836 | 428350 | Mitochondrial ribosomal protein S31 | MRPS31 | 13q14.11 |
0.000387 | 1574120 | Transcribed locus |   |   |
0.000393 | 43729 | LUC7-like 2 (S. cerevisiae) | LUC7L2 | 7q34 |
0.000402 | 756923 | F-box protein 5 | FBXO5 | 6q25-q26 |
0.0004049 | 42851 | Activity-dependent neuroprotector | ADNP | 20q13.13 |
0.0004058 | 195070 | CDNA FLJ39641 fis, clone SMINT2003423 |   |   |
0.0004082 | 345724 | SVAP1 protein | IMAGE3451454 | 1q42.13 |
0.0004103 | 247230 | MARVEL domain containing 2 | MARVELD2 | 5q13.2 |
0.0004123 | 322739 | Protein tyrosine phosphatase, non-receptor type 3 | PTPN3 | 9q31 |
0.000422 | 43618 | Transcribed locus, moderately similar to NP_775735.1 |   |   |
0.000423 | 179044 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa | NDUFB9 | 8q13.3 |
0.0004273 | 298089 | Frataxin | FXN | 9q13-q21.1 |
0.0004298 | 795598 | Enhancer of polycomb homolog 1 (Drosophila) | EPC1 | 10p11 |
0.0004305 | 742884 | Cell division cycle 2, G1 to S and G2 to M | CDC2 | 10q21.1 |
0.0004313 | 279007 | WD repeat domain 26 | WDR26 | 1q42.12 |
0.0004428 | 754469 | Regulating synaptic membrane exocytosis 4 | RIMS4 | 20q13.12 |
0.0004455 | 243736 | Stromal membrane-associated protein 1-like | LOC64744 | 1p35.3-p34.1 |
0.0004456 | 66321 | TAF11 RNA polymerase II, TATA box binding protein | TAF11 | 6p21.31 |
0.0004542 | 152098 | Conserved helix-loop-helix ubiquitous kinase | CHUK | 10q24-q25 |
0.0004623 | 743353 | Polymerase (DNA-directed), epsilon 4 (p12 subunit) | POLE4 | 2p12 |
0.0004635 | 262028 | Hypothetical LOC344595 |   | 3q13.12 |
0.0004639 | 198981 | Cell division cycle associated 2 | CDCA2 | 8p21.2 |
0.0004838 | 183283 | Mortality factor 4 like 2 | MORF4L2 | Xq22 |
0.0004909 | 755531 | Hypothetical protein MGC61550 | MGC61550 | 15q26.1 |
0.0004936 | 727937 | Homo sapiens, clone IMAGE:5271876, mRNA |   |   |
0.0004953 | 243638 | Transcribed locus, weakly similar to XP_375099.1 |   |   |
0.0004958 | 29258 | Leucine rich repeat containing 40 | FLJ20331 | 1p31.1 |
0.000506 | 1619099 | Hypothetical LOC339693 |   | 2q13 |
0.0005096 | 727533 | Zinc finger protein 638 | ZNF638 | 2p13.2-p13.1 |
0.0005343 | 741662 |   |   |   |
0.0005349 | 265310 | Glutathione transferase zeta 1 (maleylacetoacetate isomerase) | GSTZ1 | 14q24.3 |
0.0005536 | 297055 | Interleukin 13 receptor, alpha 1 | IL13RA1 | Xq24 |
0.0005761 | 302591 | Ras homolog gene family, member H | RHOH | 4p13 |
0.0005812 | 826617 | Actin related protein 2/3 complex, subunit 2, 34kDa | ARPC2 | 2q36.1 |
0.0005824 | 1881166 | F-box and leucine-rich repeat protein 10 | FBXL10 | 12q24.31 |
0.0005857 | 243703 | Protein phosphatase 1, regulatory (inhibitor) subunit 3F | PPP1R3F | Xp11.23 |
0.0005944 | 143624 |   |   |   |
0.0005982 | 172028 | Adaptin-ear-binding coat-associated protein 2 | FLJ10420 | 1p36.13 |
0.0006027 | 307886 | NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) | NDUFS6 | 5p15.33 |