Microarray Publications Database
Supplementary Data: Table 2A
Top 200 BRCA1 genotype predictor genes by SVM.
p Value | CloneID | Description | Locus | CytoBand |
---|---|---|---|---|
0.00000007719 | 128208 | Hypothetical protein DKFZp586I1420 | DKFZp586I1420 | 7p15.1 |
0.000001108 | 23658 | SET domain and mariner transposase fusion gene | SETMAR | 3p26.1 |
0.000001313 | 271702 | Alkylglycerone phosphate synthase | AGPS | 2q31 |
0.000004678 | 1186121 | CDNA FLJ12676 fis, clone NT2RM4002383 |   |   |
0.000005981 | 259432 | FLJ46385 protein | FLJ46385 | 19q13.42 |
0.00000633 | 774198 | Cell division cycle 26 | KIAA0828 | 7q32.3 |
0.000006535 | 726485 | Transcribed locus, moderately similar to XP_498099.1 |   |   |
0.000006885 | 200307 | Hypothetical protein FLJ31153 | FLJ31153 | 16p13.11 |
0.000009319 | 1623656 | Transcribed locus |   |   |
0.000009486 | 198528 | Transcribed locus, weakly similar to XP_517454.1 |   |   |
0.00001174 | 1032836 | Zinc finger protein 253 | LOC114977 | 19p13.11 |
0.0000173 | 1646105 | APG10 autophagy 10-like (S. cerevisiae) | APG10L | 5q14.1-q14.2 |
0.00001748 | 258404 | Solute carrier family 6, member 15 | SLC6A15 | 12q21.3 |
0.00001751 | 267778 | MYST histone acetyltransferase 1 | MYST1 | 16p11.2 |
0.00001909 | 143365 | Hypothetical protein DKFZp761E198 | DKFZp761E198 | 11q13.1 |
0.00002497 | 195750 | CDNA FLJ32429 fis, clone SKMUS2001014 |   |   |
0.0000287 | 2405186 | Cytochrome P450, family 4, subfamily F, polypeptide 11 | CYP4F11 | 19p13.1 |
0.00002871 | 810099 | KIAA1217 | KIAA1217 | 10p12.31 |
0.00003255 | 258776 | Hypothetical protein MGC33365 | MGC33365 | 3q24 |
0.00005522 | 42420 | Membrane-associated ring finger (C3HC4) 6 | MARCH-VI | 5p15.2 |
0.00006043 | 39544 | Carbonic anhydrase VB, mitochondrial | CA5B | Xp21.1 |
0.00006105 | 262028 | Hypothetical LOC344595 |   | 3q13.12 |
0.00006115 | 145171 | Phosphatase and actin regulator 2 | PHACTR2 | 6q24.2 |
0.000062 | 487430 | Chromosome 6 open reading frame 93 | C6orf93 | 6q24.2 |
0.00006357 | 204377 | Lysyl oxidase | LOX | 5q23.2 |
0.00006945 | 199296 | TIA1 cytotoxic granule-associated RNA binding protein | TIA1 | 2p13 |
0.00007062 | 2357262 | Ankyrin repeat and KH domain containing 1 | ANKHD1 | 5q31.2 |
0.00007241 | 122034 | Ribosomal protein L24 | RPL24 | 3q12 |
0.00007309 | 26579 | Radical fringe homolog (Drosophila) | RFNG | 17q25 |
0.00007374 | 49553 | ADP-ribosylation factor 4-like | ARF4L | 17q12-q21 |
0.00007768 | 1185901 | BTB and CNC homology 1, basic leucine zipper transcription factor 2 | BACH2 | 6q15 |
0.00008055 | 125699 |   |   |   |
0.00008441 | 197975 |   |   |   |
0.00009241 | 32604 | Chromosome 9 open reading frame 95 | C9orf95 | 9q21.13 |
0.00009286 | 729440 | Zinc finger protein 91 (HPF7, HTF10) | ZNF91 | 19p13.1-p12 |
0.00009883 | 111549 | Splicing factor, arginine/serine-rich 11 | SFRS11 | 1p31 |
0.00009917 | 43618 | Transcribed locus, moderately similar to NP_775735.1 l(3)mbt-like 4 |   |   |
0.000101 | 162204 | Transcribed locus |   |   |
0.0001034 | 796122 | Maternal embryonic leucine zipper kinase | MELK | 9p13.2 |
0.000104 | 38792 | Arylsulfatase G | KIAA1001 | 17q24.2 |
0.0001058 | 194401 | KIAA0146 protein | KIAA0146 | 8q11.21 |
0.0001091 | 21615 | Sparc/osteonectin, cwcv and kazal-like domains proteoglycan | SPOCK | 5q31 |
0.0001111 | 200529 | Aldehyde dehydrogenase 9 family, member A1 | ALDH9A1 | 1q23.1 |
0.0001231 | 208194 | Nemo like kinase | NLK | 17q11.2 |
0.0001238 | 739983 | Kinesin family member 14 | KIF14 | 1pter-q31.3 |
0.0001246 | 129610 | Transmembrane 4 L six family member 18 | LOC116441 | 3q25.1 |
0.0001403 | 1033710 | Phosphatidic acid phosphatase type 2A | PPAP2A | 5q11 |
0.0001404 | 137016 | Transcribed locus |   |   |
0.0001415 | 46232 | Hypothetical protein MGC39900 | MGC39900 | Xq22.2 |
0.00016 | 121248 | KH-type splicing regulatory protein (FUSE binding protein 2) | KHSRP | 19p13.3 |
0.0001658 | 123843 | Zinc finger protein 146 | ZNF146 | 19q13.1 |
0.0001698 | 277411 | PI-3-kinase-related kinase SMG-1 | SMG1 | 16p12.3 |
0.0001759 | 205615 | Interleukin 15 receptor, alpha | IL15RA | 10p15-p14 |
0.0001779 | 150865 | Hypothetical gene supported by AK127273 |   | 7 |
0.0001791 | 1723501 | Hypothetical protein FLJ30469 | FLJ30469 | 19q13.31 |
0.0001798 | 134537 | Syntaxin binding protein 5 (tomosyn) | STXBP5 | 6q24.3 |
0.0001812 | 230344 | KIN, antigenic determinant of recA protein homolog (mouse) | KIN | 10p15-p14 |
0.000193 | 244299 | Transcribed locus, moderately similar to XP_496299.1 |   |   |
0.0001956 | 1645979 | Transcribed locus |   |   |
0.0001968 | 193533 | WD repeat domain 57 (U5 snRNP specific) | HPRP8BP | 1p35.2 |
0.000197 | 35526 | Leucyl/cystinyl aminopeptidase | LNPEP | 5q15 |
0.0001983 | 141983 | Cyclin H | CCNH | 5q13.3-q14 |
0.0002125 | 154652 | Hypothetical protein DKFZp547C195 | DKFZp547C195 | 11q23.3 |
0.000215 | 110220 | Homo sapiens, clone IMAGE:3621928 |   |   |
0.0002195 | 789313 | Hypothetical gene supported by AK096370 |   | 11q24.2 |
0.0002203 | 753931 | Chemokine (C-X-C motif) receptor 4 | CXCR4 | 2q21 |
0.0002211 | 1568373 | CDNA FLJ36727 fis, clone UTERU2012286 |   |   |
0.0002214 | 1642453 | CCCTC-binding factor (zinc finger protein)-like | CTCFL | 20q13.31 |
0.000222 | 26914 | Hypothetical protein FLJ13089 | FLJ13089 | 12q24.13 |
0.0002235 | 139653 | MRNA; cDNA DKFZp434L201 (from clone DKFZp434L201) |   |   |
0.0002276 | 129131 | Sec1 family domain containing 2 | SCFD2 | 4q12 |
0.0002493 | 126739 | NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa | NDUFV2 | 18p11.31-p11.2 |
0.0002524 | 1645287 | Signal transducer and activator of transcription 5B | STAT5B | 17q11.2 |
0.000259 | 741035 | Coronin, actin binding protein, 2A | CORO2A | 9q22.3 |
0.0002652 | 125300 | Hypothetical protein MGC4308 | MGC4308 | 3q12.1 |
0.0002676 | 37689 | Membrane-spanning 4-domains, subfamily A, member 8B | MS4A8B | 11q12.2 |
0.0002684 | 723874 | Membrane component, chromosome 11, surface marker 1 | M11S1 | 11p13 |
0.0002694 | 171986 | CDNA clone IMAGE:4824710, with apparent retained intron |   |   |
0.0002836 | 51847 | Hect domain and RLD 2 | HERC2 | 15q13 |
0.0002837 | 122160 | Cell growth regulator with ring finger domain 1 | CGRRF1 | 14q22.2 |
0.0002846 | 1696665 |   |   |   |
0.0002978 | 1712248 | Similar to KIAA0160 gene product is novel |   | 17q11.2 |
0.0003008 | 201393 | Chromosome 6 open reading frame 203 | C6orf203 | 6q21 |
0.000305 | 194151 | Solute carrier family 6, member 16 | SLC6A16 | 19q13.1-q13.4 |
0.0003107 | 150793 | Hypothetical protein MGC15634 | MGC15634 | 1q42.13 |
0.0003187 | 179888 | Solute carrier family 8 (sodium-calcium exchanger), member 2 | SLC8A2 | 19q13.3 |
0.0003188 | 176543 | TAO kinase 2 | TAOK2 | 16p11.2 |
0.0003192 | 137790 | Rho-related BTB domain containing 1 | RHOBTB1 | 10q21.2 |
0.0003247 | 133462 | MSTP146 (MST146) |   |   |
0.0003369 | 1713432 |   |   |   |
0.0003411 | 1506167 | CDNA FLJ37855 fis, clone BRSSN2014636 |   |   |
0.0003435 | 196180 | OCIA domain containing 2 | OCIAD2 | 4p12 |
0.0003511 | 248283 |   |   |   |
0.0003526 | 270537 | Zinc finger protein 253 | LOC114977 | 19p13.11 |
0.000355 | 279770 | Similar to Zinc finger protein 93 (Zinc finger protein HTF34) | LOC163233 | 19p12 |
0.0003676 | 133180 | Hypothetical LOC389188 |   | 3q29 |
0.0003681 | 321808 | DNA segment on chromosome X and Y (unique) | DXYS155E | Xp22.32 |
0.0003779 | 1564155 | Cullin 3 | CUL3 | 2q36.3 |
0.0003923 | 147257 | Clone 114 tumor rejection antigen |   |   |
0.0004032 | 1392091 | Hypothetical LOC400614 |   | 17q24.2 |
0.0004066 | 1723100 | Transcribed locus |   |   |
0.0004109 | 153043 | Transcribed locus |   |   |
0.0004147 | 197838 | Metal response element binding transcription factor 2 | M96 | 1p22.1 |
0.0004168 | 243852 | 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | PAPSS1 | 4q24 |
0.0004181 | 26884 | Oligodendrocyte lineage transcription factor 2 | OLIG2 | 21q22.11 |
0.0004188 | 928315 | Carbohydrate kinase-like | CARKL | 17p13 |
0.000429 | 1184179 | KIAA0809 protein | SRISNF2L | 3p21.2 |
0.0004333 | 212634 | Ubiquitin-conjugating enzyme variant Kua | Kua | 20q13.2 |
0.0004493 | 22573 | Kelch-like 11 (Drosophila) | KLHL11 | 17q21.2 |
0.0004533 | 29949 | Fibroblast growth factor 1 (acidic) | FGF1 | 5q31 |
0.0004599 | 1000314 | CDNA FLJ33139 fis, clone UTERU1000109 |   |   |
0.0004629 | 283453 | Chromosome 6 open reading frame 70 | C6orf70 | 6q27 |
0.0004662 | 266199 | Lipoma HMGIC fusion partner-like 3 | LHFPL3 | 7q22.2-q22.3 |
0.0004739 | 1552081 | Gastrulation brain homeo box 2 | GBX2 | 2q37 |
0.0004804 | 30957 | Syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa) | SNTB2 | 16q22-q23 |
0.0004947 | 149698 | MRNA; cDNA DKFZp779M2422 (from clone DKFZp779M2422) |   |   |
0.0005066 | 243703 | Protein phosphatase 1, regulatory (inhibitor) subunit 3F | PPP1R3F | Xp11.23 |
0.0005084 | 276782 | Transcribed locus |   |   |
0.0005087 | 30986 | KIAA1944 protein | KIAA1944 | 12q24.32-q24.33 |
0.0005295 | 269809 | Similar to hypothetical protein FLJ13659 | LOC115648 | 19p12 |
0.0005336 | 152364 | Splicing factor, arginine/serine-rich 1 (splicing factor 2) | SFRS1 | 17q21.3-q22 |
0.0005378 | 173188 | Pregnancy-induced growth inhibitor | OKL38 | 16q23.3 |
0.0005435 | 142728 | Ring finger protein 8 | RNF8 | 6p21.3 |
0.0005568 | 1567220 | Transcribed locus |   |   |
0.0005719 | 758200 | Hypothetical protein LOC254559 | LOC254559 | 15q25.3 |
0.0005829 | 141069 | Zinc finger protein 630 | ZNF630 | Xp11.3-p11.1 |
0.0005877 | 124913 | Ficolin (collagen/fibrinogen domain containing) 1 | FCN1 | 9q34 |
0.0005923 | 23548 | Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, | YWHAZ | 8q23.1 |
0.0006003 | 127496 |   |   |   |
0.0006046 | 39167 | Acyl-Coenzyme A oxidase 3, pristanoyl | ACOX3 | 4p15.3 |
0.0006114 | 297628 | F-box and leucine-rich repeat protein 12 | FBXL12 | 19p13.2 |
0.0006129 | 770018 | Chromosome 10 open reading frame 119 | C10orf119 | 10q26.12 |
0.0006164 | 272288 | Chromosome 20 open reading frame 26 | C20orf26 | 20p11.23 |
0.0006169 | 23776 | Quinoid dihydropteridine reductase | QDPR | 4p15.31 |
0.0006199 | 149932 | Matrix metalloproteinase 19 | MMP19 | 12q14 |
0.0006248 | 754376 | Hypothetical protein FLJ39441 | FLJ39441 | 11p15.1 |
0.0006258 | 125296 | Transcribed locus |   |   |
0.0006281 | 120969 | Phospholipase A1 member A | PLA1A | 3q13.13-q13.2 |
0.0006433 | 214714 | Protein Z, vitamin K-dependent plasma glycoprotein | PROZ | 13q34 |
0.0006441 | 1940710 | CDK5 regulatory subunit associated protein 1-like 1 | CDKAL1 | 6p22.3 |
0.0006596 | 1390002 | Vacuolar protein sorting 45A (yeast) | VPS45A | 1q21-q22 |
0.0006644 | 1390676 | Hypothetical protein MGC20983 | MGC20983 | 19p13.2 |
0.0006879 | 29789 | CD14 antigen | CD14 | 5q22-q32 |
0.0006957 | 241975 | Ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) | UBE2H | 7q32 |
0.0007027 | 809883 | PDLIM1 interacting kinase 1 like | PDIK1L | 1p36.11 |
0.0007057 | 705026 | Protein prenyltransferase alpha subunit repeat containing 1 | PTAR1 | 9q21.11 |
0.0007121 | 153979 | Plasmalemma vesicle associated protein | PLVAP | 19p13.2 |
0.0007183 | 35661 | Protein phosphatase 2, regulatory subunit B (B56), beta isoform | PPP2R5B | 11q12-q13 |
0.0007345 | 142593 | Full length insert cDNA clone YI49F05 |   |   |
0.0007366 | 201519 |   |   |   |
0.000739 | 705106 | Transcribed locus, moderately similar to XP_495815.1 |   |   |
0.0007459 | 24843 | Tripartite motif-containing 11 | TRIM11 | 1q42.13 |
0.0007496 | 1635661 | MARVEL domain containing 2 | MARVELD2 | 5q13.2 |
0.000752 | 140725 | Transforming growth factor, beta receptor I (activin A receptor type II-like kinase, 53kDa) | TGFBR1 | 9q22 |
0.0007671 | 154985 | N-acetyltransferase 5 (ARD1 homolog, S. cerevisiae) | NAT5 | 20p11.23 |
0.0007732 | 34855 | Ganglioside-induced differentiation-associated protein 1-like 1 | GDAP1L1 | 20q12 |
0.0007737 | 159376 | Sperm equatorial segment protein 1 | SPESP1 | 15q23 |
0.000775 | 1639962 | RAB22A, member RAS oncogene family | RAB22A | 20q13.32 |
0.0007765 | 41192 | Serine hydrolase-like | SERHL | 22q13.2-q13.31 |
0.0007801 | 37603 | Rho GTPase-activating protein | RICS | 11q24-q25 |
0.0007945 | 1574120 | Transcribed locus |   |   |
0.0008014 | 207959 | Phosphatidylinositol binding clathrin assembly protein | PICALM | 11q14 |
0.0008054 | 1557313 | CDNA FLJ42069 fis, clone SYNOV2011233 |   |   |
0.0008195 | 451646 | Zinc finger protein 652 | ZNF652 | 17q21.32 |
0.000829 | 199719 | Transcribed locus |   |   |
0.0008354 | 41550 | Myozenin 3 | MYOZ3 | 5q33.1 |
0.0008384 | 45037 | IQ motif and WD repeats 1 | IQWD1 | 1q24.2 |
0.0008408 | 109277 | Zinc finger protein 28 homolog (mouse) | ZFP28 |   |
0.0008662 | 1234407 | YOD1 OTU deubiquinating enzyme 1 homolog ( yeast) | DKFZp451J1719 | 1q32.2 |
0.0008715 | 302990 | Mitochondrial ribosomal protein L13 | MRPL13 | 8q22.1-q22.3 |
0.0008799 | 195070 | CDNA FLJ39641 fis, clone SMINT2003423 |   |   |
0.0008865 | 1877532 | Ataxia telangiectasia mutated (includes complementation groups A, C and D) | ATM | 11q22-q23 |
0.0008913 | 471001 | WD repeat domain 61 | REC14 | 15q25.1 |
0.0008963 | 44392 | Tetratricopeptide repeat domain 3 | TTC3 | 21q22.2 |
0.0009155 | 29797 | Ethanolamine kinase 2 | ETNK2 | 1q32.1 |
0.0009198 | 44303 | Activity-dependent neuroprotector | ADNP | 20q13.13 |
0.0009365 | 24601 | ADP-ribosylation-like factor 6 interacting protein 6 | ARL6IP6 | 2q23.3 |
0.0009479 | 123212 | PAP associated domain containing 4 | PAPD4 | 5q14.1 |
0.0009548 | 362759 | Membrane-associated ring finger (C3HC4) 1 | MARCH-I | 4q32.2 |
0.000966 | 51817 | Manic fringe homolog (Drosophila) | MFNG | 22q12 |
0.0009692 | 110119 | Membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) | MPP7 | 10p12.1 |
0.0009782 | 725702 | Pleckstrin homology domain containing, family A | PLEKHA2 | 8p11.23 |
0.0009788 | 759917 | Centromere protein C 1 | CENPC1 | 4q12-q13.3 |
0.0009864 | 37420 | Dermatan 4 sulfotransferase 1 | D4ST1 | 15q15.1 |
0.0009866 | 1751373 | Hypothetical protein DKFZp434K1172 | DKFZP434K1172 | 13q14.3 |
0.0009914 | 1030234 | Ubiquitin carboxyl-terminal hydrolase L5 | UCHL5 | 1q32 |
0.0009971 | 824544 | 3'(2'), 5'-bisphosphate nucleotidase 1 | BPNT1 | 1q41 |
0.001036 | 282633 | Chromosome 20 open reading frame 26 | C20orf26 | 20p11.23 |
0.001039 | 28343 | G protein-coupled receptor 161 | GPR161 | 1q24.2 |
0.001045 | 2329173 | KIAA1432 | KIAA1432 | 9p24.1 |
0.001046 | 122228 | Chromosome 20 open reading frame 19 | C20orf19 | 20pter-q11.23 |
0.001063 | 44222 | Trinucleotide repeat containing 15 | TNRC15 | 2q37.1 |
0.001067 | 299158 | Zinc finger protein 217 | ZNF217 | 20q13.2 |
0.00107 | 46250 |   |   |   |
0.001072 | 247082 | Hypothetical protein LOC149705 | C20orf121 | 20q13.12 |
0.001081 | 1656423 | Zinc finger protein 70 (Cos17) | ZNF70 | 22q11.2 |
0.001087 | 1557365 | Male sterility domain containing 1 | MLSTD1 | 12p11.22 |
0.001088 | 306893 | NMDA receptor regulated 1 | NARG1 | 4q31.1 |
0.001094 | 40175 | Nuclear factor I/A | NFIA | 1p31.3-p31.2 |
0.001094 | 134130 | Tyrosylprotein sulfotransferase 1 | TPST1 | 7q11.21 |