Microarray Publications Database
Supplementary Data: Table 3
The top 100 clones distinguishing prostate cancers from normal prostate tissues.
Overall Rank | Sum of Ranks | UniGene (Build #170) or Accession ID | Locus | No. in class 1 (tumours) | No. in class 2 (non-prostate tumours) | Ratio of means | Ratio of means rank | TNoM score | TNoM rank | Golub score | Golub rank | Fisher score | Fisher rank | M-W score | M-W rank | ttest score | ttest rank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 100 |   | n.s.h | 11 | 7 | 1.97 | 64 | 1 | 10 | 1.855 | 3 | 7.416 | 4 | 0.000683 | 17 | 0.00000167 | 2 |
2 | 112 | Hs.296141 | IMAGE:4249217 | 11 | 5 | 4.04 | 5 | 0 | 1 | 1.704 | 5 | 4.631 | 17 | 0.00184 | 74 | 0.0000798 | 10 |
3 | 147 |   | n.s.h | 11 | 5 | 2.67 | 22 | 1 | 10 | 1.661 | 8 | 5.096 | 13 | 0.00184 | 74 | 0.000136 | 20 |
4 | 147 | Hs.408200 | STEAP2 | 11 | 5 | 2.48 | 15 | 0 | 1 | 1.826 | 4 | 7.353 | 5 | 0.00184 | 74 | 0.000503 | 48 |
5 | 181 | Hs.446685 | ZAP128 | 11 | 8 | 2.22 | 38 | 2 | 71 | 1.352 | 18 | 3.965 | 31 | 0.000711 | 18 | 0.000046 | 5 |
6 | 184 | Hs.83190 | FASN | 11 | 10 | 2.35 | 27 | 1 | 10 | 1.146 | 46 | 3.027 | 73 | 0.00056 | 16 | 0.000101 | 12 |
7 | 188 |   | genomic 15q26.1 | 11 | 5 | 2.1 | 51 | 0 | 1 | 1.365 | 17 | 4.874 | 16 | 0.00184 | 74 | 0.000198 | 29 |
8 | 193 |   | n.s.h | 11 | 10 | 1.55 | 173 | 0 | 1 | 1.661 | 9 | 6.723 | 6 | 0.000108 | 3 | 0.000000942 | 1 |
9 | 210 |   | failed to sequence | 11 | 10 | 2.11 | 48 | 2 | 71 | 1.262 | 28 | 3.547 | 47 | 0.00043 | 10 | 0.0000494 | 6 |
10 | 240 | Hs.406510 | ATP5B | 11 | 10 | 1.49 | 205 | 1 | 10 | 1.565 | 10 | 6.011 | 10 | 0.000108 | 2 | 0.0000138 | 3 |
11 | 241 |   | n.s.h | 11 | 10 | 2.07 | 56 | 2 | 71 | 1.232 | 30 | 3.422 | 50 | 0.000934 | 30 | 0.0000378 | 4 |
12 | 242 |   | n.s.h | 11 | 8 | 1.86 | 88 | 2 | 71 | 1.294 | 24 | 3.898 | 34 | 0.000711 | 18 | 0.0000636 | 7 |
13 | 249 | Hs.239500 | MGC13114 | 11 | 10 | 1.85 | 90 | 2 | 71 | 1.3 | 23 | 3.61 | 43 | 0.000491 | 13 | 0.000068 | 9 |
14 | 256 | Hs.83190 | FASN | 11 | 10 | 2.22 | 39 | 1 | 10 | 1.093 | 60 | 2.75 | 98 | 0.000725 | 24 | 0.000177 | 25 |
15 | 263 |   | genomic 3q27.3 | 11 | 5 | 1.81 | 98 | 1 | 10 | 1.457 | 14 | 5.491 | 11 | 0.00268 | 108 | 0.000162 | 22 |
16 | 276 |   | failed to sequence | 11 | 8 | 1.9 | 74 | 2 | 71 | 1.177 | 40 | 3.339 | 55 | 0.000711 | 18 | 0.000134 | 18 |
17 | 284 | Hs.72402 | LOC152185 | 11 | 9 | 1.89 | 78 | 2 | 71 | 1.202 | 35 | 3.418 | 51 | 0.00095 | 38 | 0.0000854 | 11 |
18 | 285 | Hs.98510 | DKFZp686L20145 | 11 | 6 | 1.9 | 75 | 1 | 10 | 1.181 | 38 | 2.748 | 99 | 0.0000887 | 1 | 0.000639 | 62 |
19 | 305 | Hs.180414 | HSPA8 | 11 | 10 | 1.78 | 106 | 2 | 71 | 1.18 | 39 | 3.412 | 52 | 0.000725 | 24 | 0.000105 | 13 |
20 | 312 | Hs.459704 | FLJ20444 | 6 | 4 | 2.76 | 13 | 0 | 1 | 3.258 | 1 | 26.725 | 1 | 0.0105 | 282 | 0.000107 | 14 |
21 | 313 | Hs.296638 | GDF15 | 11 | 10 | 2.78 | 12 | 2 | 71 | 1.224 | 31 | 2.465 | 130 | 0.000287 | 6 | 0.000671 | 63 |
22 | 315 |   | 18S ribosomal | 11 | 7 | 1.78 | 107 | 1 | 10 | 1.466 | 13 | 3.923 | 33 | 0.00325 | 128 | 0.000177 | 24 |
23 | 328 | Hs.21753 | JM5 | 11 | 10 | 1.82 | 94 | 2 | 71 | 1.141 | 47 | 2.957 | 76 | 0.000725 | 24 | 0.000119 | 16 |
24 | 336 |   | genomic 3q26.31 | 10 | 6 | 1.82 | 95 | 1 | 10 | 1.343 | 19 | 4.227 | 26 | 0.0048 | 163 | 0.000177 | 23 |
25 | 354 | AF203815 | alpha gene | 11 | 10 | 2.49 | 21 | 2 | 71 | 1.103 | 56 | 2.419 | 137 | 0.000934 | 30 | 0.00039 | 39 |
26 | 367 | Hs.439874 | SERP1 | 10 | 9 | 2.11 | 49 | 2 | 71 | 1.166 | 42 | 3.09 | 71 | 0.00252 | 102 | 0.000256 | 32 |
27 | 374 | Hs.135890 | PF12 | 11 | 5 | 2.14 | 47 | 1 | 10 | 1.194 | 37 | 2.88 | 86 | 0.00387 | 142 | 0.00055 | 52 |
28 | 379 |   | genomic 2q35 | 11 | 8 | 1.74 | 117 | 1 | 10 | 1.107 | 55 | 2.99 | 75 | 0.0017 | 69 | 0.000553 | 53 |
29 | 383 | Hs.83190 | FASN | 11 | 10 | 1.91 | 73 | 1 | 10 | 0.986 | 109 | 2.51 | 126 | 0.000934 | 30 | 0.000317 | 35 |
30 | 395 | Hs.135892 | NCAM2 | 8 | 4 | 1.99 | 62 | 0 | 1 | 1.662 | 7 | 6.637 | 7 | 0.00658 | 205 | 0.00178 | 113 |
31 | 399 | Hs.435065 | RNF3 | 11 | 5 | 1.53 | 184 | 1 | 10 | 1.375 | 16 | 4.392 | 23 | 0.00268 | 108 | 0.00061 | 58 |
32 | 408 | Hs.83190 | FASN | 11 | 10 | 2.29 | 31 | 1 | 10 | 0.961 | 123 | 2.234 | 177 | 0.000725 | 24 | 0.000441 | 43 |
33 | 417 | Hs.355627 | TBCA | 11 | 9 | 1.94 | 68 | 2 | 71 | 1.055 | 73 | 2.608 | 116 | 0.00142 | 55 | 0.000287 | 34 |
34 | 421 | Hs.129903 | POLL | 9 | 5 | 1.93 | 70 | 1 | 10 | 1.422 | 15 | 4.559 | 19 | 0.00627 | 200 | 0.00167 | 107 |
35 | 434 | Hs.26915 | SPTBN2 | 11 | 8 | 1.44 | 256 | 2 | 71 | 1.268 | 26 | 3.89 | 36 | 0.000524 | 14 | 0.000215 | 31 |
36 | 436 | Hs.402697 | EIF4G3 | 11 | 10 | 1.47 | 219 | 1 | 10 | 1.077 | 65 | 2.947 | 77 | 0.000823 | 29 | 0.00032 | 36 |
37 | 437 |   | genomic 12q14.2 | 11 | 10 | 1.45 | 240 | 2 | 71 | 1.204 | 33 | 3.621 | 42 | 0.000725 | 24 | 0.000185 | 27 |
38 | 454 | Hs.180414 | HSPA8 | 11 | 10 | 1.73 | 118 | 3 | 240 | 1.265 | 27 | 3.583 | 45 | 0.000329 | 7 | 0.000128 | 17 |
39 | 461 | Hs.356742 | DRAP1 | 11 | 9 | 1.52 | 188 | 2 | 71 | 1.132 | 50 | 3.277 | 60 | 0.00162 | 66 | 0.000182 | 26 |
40 | 471 |   | failed to sequence | 11 | 6 | 1.42 | 289 | 1 | 10 | 1.33 | 20 | 4.519 | 20 | 0.00257 | 104 | 0.000197 | 28 |
41 | 488 | Hs.240443 | DKFZp686L01105 | 11 | 10 | 2.74 | 14 | 2 | 71 | 1.035 | 80 | 2.019 | 225 | 0.000934 | 30 | 0.000748 | 68 |
42 | 489 | Hs.408200 | STEAP2 | 11 | 10 | 2.23 | 36 | 2 | 71 | 1.016 | 89 | 2.233 | 178 | 0.00153 | 56 | 0.00061 | 59 |
43 | 499 | Hs.127270 | KIAA1545 | 11 | 8 | 1.57 | 163 | 2 | 71 | 1.082 | 62 | 2.906 | 80 | 0.0017 | 69 | 0.000566 | 54 |
44 | 505 | Hs.131736 | NEDD5 | 11 | 7 | 1.43 | 275 | 1 | 10 | 1.14 | 48 | 3.122 | 69 | 0.000947 | 37 | 0.000695 | 66 |
45= | 507 | Hs.95612 | DSC2 | 11 | 5 | 1.91 | 149 | 2 | 71 | 1.007 | 95 | 3.54 | 48 | 0.00124 | 53 | 0.00132 | 91 |
45= | 507 | Hs.178011 | FLJ20257 | 11 | 10 | 1.61 | 72 | 2 | 71 | 0.999 | 103 | 2.289 | 165 | 0.00153 | 56 | 0.000409 | 40 |
47 | 509 | Hs.107720 | FUS | 11 | 10 | 1.86 | 83 | 3 | 240 | 1.128 | 52 | 2.885 | 85 | 0.000934 | 30 | 0.000135 | 19 |
48 | 513 | Hs.97128 | ZNF207 | 11 | 10 | 1.44 | 257 | 2 | 71 | 1.12 | 54 | 3.237 | 64 | 0.0012 | 46 | 0.00014 | 21 |
49 | 518 | Hs.232116 | PRKWNK2 | 11 | 6 | 2.44 | 25 | 1 | 10 | 1.167 | 41 | 2.022 | 222 | 0.00257 | 104 | 0.002 | 116 |
50 | 539 | Hs.156324 | PRKACB | 11 | 8 | 1.75 | 111 | 3 | 240 | 1.2 | 36 | 3.459 | 49 | 0.00128 | 54 | 0.000509 | 49 |
51 | 542 | Hs.209846 | LRBA | 11 | 9 | 1.44 | 254 | 2 | 71 | 1.039 | 76 | 2.89 | 83 | 0.000723 | 21 | 0.000348 | 37 |
52 | 543 | Hs.153177 | RPS28 | 11 | 5 | 1.67 | 128 | 2 | 71 | 1.223 | 32 | 3.28 | 59 | 0.00551 | 182 | 0.000803 | 71 |
53 | 547 | Hs.405410 | OGT | 11 | 9 | 1.39 | 320 | 1 | 10 | 1.127 | 53 | 3.325 | 56 | 0.00162 | 66 | 0.000433 | 42 |
54 | 548 | Hs.158530 | RAPGEFL1 | 11 | 5 | 1.78 | 105 | 2 | 71 | 1.32 | 21 | 3.256 | 62 | 0.00776 | 234 | 0.000575 | 55 |
55 | 561 | Hs.31074 | SGSH | 11 | 5 | 1.67 | 130 | 1 | 10 | 1.007 | 94 | 3.282 | 58 | 0.00551 | 182 | 0.0012 | 87 |
56 | 569 | Hs.66731 | HOXB13 | 11 | 9 | 1.47 | 215 | 2 | 71 | 1.028 | 84 | 2.625 | 112 | 0.000411 | 8 | 0.0011 | 79 |
57 | 581 |   | genomic 6q23.3 | 11 | 9 | 2.6 | 18 | 2 | 71 | 1.037 | 78 | 1.868 | 264 | 0.00095 | 38 | 0.00174 | 112 |
58 | 584 |   | failed to sequence | 11 | 9 | 1.66 | 131 | 2 | 71 | 1.006 | 96 | 2.306 | 160 | 0.000723 | 21 | 0.00165 | 105 |
59= | 588 |   | failed to sequence | 11 | 8 | 1.99 | 127 | 1 | 10 | 0.963 | 121 | 2.348 | 150 | 0.00225 | 91 | 0.00127 | 89 |
59= | 588 | Hs.408200 | STEAP2 | 11 | 5 | 1.67 | 61 | 1 | 10 | 1.679 | 6 | 6.162 | 9 | 0.00184 | 74 | 0.0312 | 428 |
61 | 592 |   | genomic 5q35 | 10 | 7 | 1.35 | 398 | 1 | 10 | 1.511 | 12 | 5.465 | 12 | 0.00211 | 87 | 0.000805 | 73 |
62 | 601 | Hs.433343 | SRRM2 | 11 | 10 | 1.66 | 135 | 3 | 240 | 1.086 | 61 | 2.829 | 89 | 0.0012 | 46 | 0.000204 | 30 |
63 | 604 | Hs.374588 | RPL17 | 11 | 10 | 1.44 | 249 | 2 | 71 | 1.069 | 67 | 2.743 | 100 | 0.00153 | 56 | 0.000619 | 61 |
64 | 612 | Hs.438037 | GREB1 | 10 | 5 | 2.33 | 28 | 2 | 71 | 1.136 | 49 | 2.336 | 153 | 0.00485 | 165 | 0.00338 | 146 |
65 | 614 | Hs.147189 | CTDSPL | 11 | 10 | 1.71 | 123 | 3 | 240 | 1.067 | 68 | 2.685 | 108 | 0.000934 | 30 | 0.000467 | 45 |
66 | 628 | Hs.433024 | LOC401504 | 11 | 8 | 1.6 | 150 | 2 | 71 | 1.005 | 98 | 2.575 | 120 | 0.00295 | 117 | 0.000804 | 72 |
67 | 641 | Hs.1915 | FOLH1 | 9 | 4 | 2.57 | 19 | 0 | 1 | 0.986 | 110 | 7.753 | 3 | 0.0308 | 462 | 0.00047 | 46 |
68 | 648 | Hs.181368 | PRPF8 | 11 | 5 | 1.56 | 167 | 1 | 10 | 1.203 | 34 | 3.959 | 32 | 0.00387 | 142 | 0.00983 | 263 |
69 | 665 | Hs.300141 | RPL39 | 11 | 10 | 1.77 | 108 | 3 | 240 | 1.057 | 72 | 2.54 | 124 | 0.00219 | 88 | 0.000284 | 33 |
70 | 672 | Hs.356502 | RPLP1 | 11 | 10 | 1.39 | 316 | 2 | 71 | 0.961 | 123 | 2.826 | 91 | 0.000934 | 30 | 0.000426 | 41 |
71 | 679 | Hs.529860 | IMAGE:5229459 | 11 | 6 | 1.36 | 377 | 1 | 10 | 1.101 | 58 | 4.216 | 27 | 0.00184 | 73 | 0.00279 | 134 |
72 | 686 | Hs.272822 | RUVBL1 | 11 | 9 | 1.59 | 158 | 3 | 240 | 1.094 | 59 | 2.687 | 107 | 0.00162 | 66 | 0.000603 | 56 |
73 | 687 |   | mitochondrial | 9 | 6 | 1.37 | 354 | 1 | 10 | 1.058 | 71 | 3.548 | 46 | 0.00265 | 107 | 0.00152 | 99 |
74 | 695 |   | genomic 19p13.3 | 6 | 5 | 1.51 | 191 | 1 | 10 | 1.292 | 25 | 4.324 | 24 | 0.0106 | 284 | 0.00403 | 161 |
75 | 701 | Hs.249798 | NEDD4L | 11 | 10 | 2.48 | 23 | 1 | 10 | 1.032 | 82 | 1.485 | 413 | 0.000165 | 4 | 0.00428 | 169 |
76 | 706 | Hs.512586 | MOV10 | 11 | 10 | 1.78 | 102 | 3 | 240 | 0.997 | 104 | 2.322 | 157 | 0.00153 | 56 | 0.00048 | 47 |
77 | 709 |   | failed to sequence | 10 | 6 | 1.4 | 310 | 2 | 71 | 1.152 | 44 | 3.595 | 44 | 0.0048 | 163 | 0.000949 | 77 |
78 | 714 | Hs.512689 | AZ2 | 11 | 7 | 1.59 | 157 | 2 | 71 | 1.038 | 77 | 2.703 | 106 | 0.00325 | 128 | 0.00466 | 175 |
79 | 735 | Hs.8518 | SEPN1 | 11 | 10 | 1.55 | 171 | 3 | 240 | 1.002 | 102 | 2.827 | 90 | 0.00246 | 94 | 0.000355 | 38 |
80 | 748 | Hs.118483 | MYO6 | 11 | 8 | 2.03 | 58 | 1 | 10 | 1.004 | 99 | 1.612 | 355 | 0.00028 | 5 | 0.00686 | 221 |
81 | 752 | Hs.31532 | LOC92249 | 9 | 4 | 1.39 | 321 | 1 | 10 | 1.544 | 11 | 4.489 | 21 | 0.0136 | 320 | 0.000755 | 69 |
82 | 765 |   | genomic 15q26.1 | 11 | 10 | 1.61 | 147 | 1 | 10 | 0.741 | 309 | 2.501 | 127 | 0.0031 | 121 | 0.000524 | 51 |
83 | 766 | Hs.274416 | NDUFA6 | 10 | 8 | 2.01 | 59 | 3 | 240 | 1.035 | 79 | 2.264 | 170 | 0.00337 | 130 | 0.00122 | 88 |
84 | 767 |   | genomic 19p12 | 11 | 5 | 1.6 | 155 | 2 | 71 | 1.065 | 69 | 3.393 | 54 | 0.00551 | 182 | 0.00797 | 236 |
85 | 769 | AF203815 | alpha gene | 11 | 10 | 2.2 | 41 | 2 | 71 | 0.925 | 146 | 1.647 | 334 | 0.00153 | 56 | 0.00216 | 121 |
86 | 799 | Hs.389777 | PDE9A | 11 | 7 | 1.56 | 165 | 2 | 71 | 0.935 | 142 | 2.421 | 135 | 0.00574 | 191 | 0.00148 | 95 |
87 | 802 | Hs.289093 | RPL35A | 11 | 10 | 1.49 | 200 | 3 | 240 | 1.012 | 91 | 2.547 | 123 | 0.00153 | 56 | 0.00137 | 92 |
88 | 808 | Hs.504892 | ZFP64 | 11 | 9 | 1.78 | 104 | 3 | 240 | 0.963 | 121 | 2.173 | 190 | 0.00209 | 86 | 0.000726 | 67 |
89 | 815 | Hs.288856 | PFDN5 | 11 | 10 | 1.93 | 69 | 3 | 240 | 0.912 | 158 | 2.13 | 197 | 0.00246 | 94 | 0.000609 | 57 |
90 | 833 |   | failed PCR | 6 | 4 | 1.56 | 168 | 0 | 1 | 1.078 | 64 | 4.567 | 18 | 0.0105 | 282 | 0.0131 | 300 |
91 | 836 | Hs.279518 | APLP2 | 11 | 10 | 1.62 | 143 | 3 | 240 | 0.921 | 149 | 2.251 | 172 | 0.00153 | 56 | 0.000884 | 76 |
92 | 847 |   | failed to sequence | 11 | 6 | 4.72 | 2 | 1 | 10 | 0.958 | 126 | 1.438 | 426 | 0.00257 | 104 | 0.00477 | 179 |
93 | 850 |   | n.s.h | 11 | 6 | 1.34 | 406 | 2 | 71 | 1.079 | 63 | 3.401 | 53 | 0.00356 | 138 | 0.00206 | 119 |
94 | 857 | Hs.307915 | ABCC4 | 11 | 9 | 1.53 | 181 | 3 | 240 | 0.983 | 111 | 2.405 | 142 | 0.00095 | 38 | 0.00334 | 145 |
95 | 878 | Hs.459927 | PTMA | 11 | 8 | 1.83 | 93 | 3 | 240 | 0.97 | 116 | 2.086 | 206 | 0.00385 | 141 | 0.00115 | 82 |
96 | 880 | Hs.426930 | ACTB | 11 | 10 | 1.49 | 204 | 2 | 71 | 1.072 | 66 | 2.203 | 183 | 0.00827 | 245 | 0.00174 | 111 |
97 | 883 |   | failed to sequence | 11 | 4 | 1.51 | 195 | 1 | 10 | 0.98 | 112 | 4.136 | 29 | 0.0223 | 408 | 0.00262 | 129 |
98 | 887 | Hs.405917 | FLJ10707 | 11 | 10 | 1.37 | 355 | 3 | 240 | 1.039 | 75 | 2.684 | 109 | 0.00106 | 44 | 0.00069 | 64 |
99 | 891 | Hs.443811 | CALD1 | 11 | 10 | 1.69 | 125 | 3 | 240 | 0.969 | 117 | 1.968 | 236 | 0.0012 | 46 | 0.00249 | 127 |
100 | 892 | Hs.271953 | SESN3 | 8 | 6 | 1.48 | 211 | 2 | 71 | 1.024 | 86 | 2.728 | 102 | 0.00813 | 239 | 0.00491 | 183 |