Microarray Publications Database
Supplementary Data: Table 2
The top 100 clones distinguishing normal prostate from non-prostate normal tissues.
Overall Rank | Sum of Ranks | UniGene (Build #170) or Accession ID | Locus | No. in class 1 (tumours) | No. in class 2 (non-prostate tumours) | Ratio of means | Ratio of means rank | TNoM score | TNoM rank | Golub score | Golub rank | Fisher score | Fisher rank | M-W score | M-W rank | ttest score | ttest rank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 65 | Hs.97128 | ZNF207 | 10 | 12 | 2.34 | 33 | 1 | 6 | 1.585 | 4 | 4.264 | 4 | 0.000869 | 15 | 0.0000511 | 3 |
2 | 86 | Hs.180414 | HSPA8 | 10 | 12 | 4.64 | 8 | 1 | 6 | 1.26 | 10 | 1.926 | 25 | 0.0001 | 1 | 0.00232 | 36 |
3 | 110 | Hs.171995 | KLK3 | 9 | 11 | 3.16 | 16 | 1 | 6 | 1.328 | 8 | 2.334 | 18 | 0.00124 | 27 | 0.00226 | 35 |
4 | 165 | Hs.226007 | RDH11 | 10 | 12 | 4.55 | 9 | 1 | 6 | 1.156 | 20 | 1.499 | 51 | 0.000978 | 17 | 0.00507 | 62 |
5 | 174 | Hs.9527 | 37712 | 9 | 12 | 2.56 | 21 | 2 | 48 | 1.169 | 18 | 1.879 | 27 | 0.00029 | 4 | 0.00411 | 56 |
6 | 182 | Hs.120247 | NUFIP1 | 5 | 12 | 1.56 | 143 | 0 | 1 | 1.78 | 2 | 6.115 | 2 | 0.00157 | 30 | 0.0000524 | 4 |
7 | 208 |   | failed to sequence | 10 | 6 | 2.21 | 47 | 1 | 6 | 1.364 | 7 | 2.653 | 10 | 0.00924 | 126 | 0.000627 | 12 |
8 | 223 |   | genomic 6q21 | 4 | 9 | 1.58 | 136 | 0 | 1 | 2.957 | 1 | 14.097 | 1 | 0.00548 | 83 | 0.000000951 | 1 |
9 | 231 | Hs.425274 | RPL41 | 10 | 12 | 2.06 | 57 | 2 | 48 | 1.136 | 21 | 1.9 | 26 | 0.00301 | 50 | 0.00198 | 29 |
10 | 238 | Hs.171995 | KLK3 | 10 | 12 | 2.55 | 22 | 2 | 48 | 1.015 | 30 | 1.399 | 63 | 0.000606 | 10 | 0.00561 | 65 |
11 | 242 |   | genomic 9p13.2 | 5 | 11 | 2.02 | 61 | 1 | 6 | 1.195 | 14 | 2.568 | 13 | 0.0108 | 137 | 0.000619 | 11 |
12 | 253 | Hs.19525 | FLJ22794 | 10 | 12 | 1.55 | 147 | 2 | 48 | 1.074 | 25 | 2.262 | 21 | 0.00037 | 7 | 0.000245 | 5 |
13 | 255 | Hs.408073 | RPS6 | 10 | 12 | 1.67 | 105 | 2 | 48 | 0.937 | 48 | 1.751 | 34 | 0.000684 | 12 | 0.000461 | 8 |
14 | 263 | Hs.401929 | RPL10 | 5 | 11 | 1.73 | 86 | 1 | 6 | 1.216 | 13 | 2.636 | 11 | 0.0108 | 137 | 0.000511 | 10 |
15 | 265 | Hs.265174 | RPL32 | 9 | 12 | 1.42 | 244 | 1 | 6 | 1.424 | 6 | 4.038 | 5 | 0.000166 | 2 | 0.00000735 | 2 |
16 | 293 | AF203815 | alpha gene | 10 | 12 | 2.42 | 30 | 2 | 48 | 0.928 | 52 | 1.468 | 55 | 0.00372 | 59 | 0.00336 | 49 |
17 | 329 | Hs.288856 | PFDN5 | 10 | 11 | 1.73 | 85 | 2 | 48 | 0.893 | 68 | 1.384 | 64 | 0.000491 | 9 | 0.0039 | 55 |
18 | 333 | Hs.278695 | prostein | 10 | 12 | 5.17 | 7 | 2 | 48 | 0.97 | 41 | 1.071 | 112 | 0.000222 | 3 | 0.0125 | 122 |
19 | 342 | Hs.202300 | OR51E2 | 9 | 12 | 1.67 | 103 | 2 | 48 | 0.96 | 43 | 1.527 | 46 | 0.00224 | 38 | 0.00553 | 64 |
20 | 345 | Hs.324104 | APBA2BP | 8 | 10 | 1.58 | 135 | 2 | 48 | 0.937 | 49 | 1.754 | 32 | 0.00292 | 49 | 0.00221 | 32 |
21 | 355 |   | n.s.h | 4 | 11 | 1.48 | 191 | 1 | 6 | 1.177 | 16 | 2.415 | 15 | 0.00744 | 107 | 0.00148 | 20 |
22 | 357 | AF203815 | alpha gene | 10 | 12 | 3.48 | 12 | 3 | 152 | 0.941 | 47 | 1.504 | 50 | 0.00301 | 50 | 0.00311 | 46 |
23 | 382 | Hs.129895 | TBX3 | 10 | 8 | 2.21 | 48 | 2 | 48 | 0.897 | 63 | 1.354 | 70 | 0.00588 | 92 | 0.00484 | 61 |
24 | 393 | Hs.171995 | KLK3 | 10 | 12 | 2.23 | 46 | 3 | 152 | 0.972 | 38 | 1.306 | 75 | 0.000326 | 6 | 0.00673 | 76 |
25 | 395 |   | genomic 14 | 9 | 10 | 1.74 | 83 | 3 | 152 | 0.983 | 37 | 1.675 | 37 | 0.00192 | 32 | 0.00373 | 54 |
26 | 410 | Hs.129969 | ELK4 | 10 | 12 | 1.98 | 65 | 2 | 48 | 0.896 | 64 | 1.168 | 96 | 0.00242 | 39 | 0.00876 | 98 |
27= | 424 | Hs.158688 | EIF5B | 8 | 4 | 1.37 | 305 | 0 | 1 | 1.589 | 3 | 4.9 | 3 | 0.00658 | 96 | 0.00128 | 16 |
27= | 424 | Hs.408073 | RPS6 | 10 | 12 | 1.78 | 78 | 3 | 152 | 0.92 | 55 | 1.585 | 43 | 0.00458 | 72 | 0.00173 | 24 |
29 | 432 | Hs.9003 | FLJ13868 | 7 | 7 | 1.41 | 255 | 1 | 6 | 1.091 | 23 | 2.381 | 16 | 0.00601 | 93 | 0.00262 | 39 |
30 | 434 | Hs.446628 | RPS4X | 10 | 12 | 1.67 | 104 | 3 | 152 | 0.862 | 76 | 1.485 | 52 | 0.00217 | 36 | 0.00107 | 14 |
31 | 436 | Hs.408200 | STEAP2 | 10 | 12 | 2.14 | 50 | 3 | 152 | 0.896 | 65 | 1.27 | 84 | 0.000771 | 13 | 0.00621 | 72 |
32 | 439 | Hs.374553 | LAMR1 | 5 | 11 | 1.63 | 114 | 1 | 6 | 1.075 | 24 | 2.144 | 22 | 0.00462 | 78 | 0.0246 | 195 |
33 | 441 |   | failed to sequence | 10 | 12 | 1.54 | 150 | 2 | 48 | 0.801 | 106 | 1.263 | 86 | 0.00123 | 23 | 0.00188 | 28 |
34 | 442 | Hs.25367 | RAB4B | 9 | 6 | 1.93 | 67 | 2 | 48 | 0.971 | 39 | 1.697 | 36 | 0.0184 | 195 | 0.00429 | 57 |
35 | 445 | Hs.119598 | RPL3 | 10 | 12 | 1.67 | 106 | 3 | 152 | 0.864 | 75 | 1.463 | 56 | 0.00194 | 33 | 0.00169 | 23 |
36 | 445 |   | failed to sequence | 4 | 5 | 2.53 | 25 | 0 | 1 | 1.446 | 5 | 3.4 | 6 | 0.0143 | 159 | 0.0375 | 249 |
37= | 458 | Hs.178137 | TOB1 | 10 | 12 | 1.35 | 321 | 2 | 48 | 0.989 | 35 | 1.927 | 24 | 0.0011 | 21 | 0.000476 | 9 |
37= | 458 |   | failed to sequence | 7 | 11 | 1.36 | 311 | 1 | 6 | 0.99 | 33 | 1.51 | 49 | 0.00111 | 22 | 0.00237 | 37 |
39 | 460 |   | failed to sequence | 5 | 10 | 1.43 | 238 | 1 | 6 | 0.999 | 32 | 1.756 | 31 | 0.00705 | 106 | 0.00322 | 47 |
40 | 467 | Hs.146170 | CDCP1 | 9 | 11 | 1.49 | 179 | 3 | 152 | 0.933 | 51 | 1.739 | 35 | 0.00209 | 35 | 0.00111 | 15 |
41 | 505 | Hs.441109 | PEX19 | 8 | 6 | 1.37 | 306 | 1 | 6 | 1.227 | 11 | 2.622 | 12 | 0.00451 | 71 | 0.00883 | 99 |
42 | 523 | Hs.275865 | B3GALT4 | 10 | 12 | 1.56 | 142 | 3 | 152 | 0.831 | 89 | 1.376 | 65 | 0.00334 | 56 | 0.00141 | 19 |
43 | 538 | Hs.171995 | KLK3 | 9 | 12 | 3.25 | 15 | 2 | 48 | 0.865 | 74 | 0.918 | 152 | 0.00284 | 47 | 0.026 | 202 |
44 | 539 | Hs.368056 | COPG | 10 | 12 | 1.34 | 340 | 3 | 152 | 1.163 | 19 | 2.467 | 14 | 0.000475 | 8 | 0.000343 | 6 |
45 | 546 | Hs.171995 | KLK3 | 9 | 12 | 13.15 | 2 | 1 | 6 | 0.893 | 69 | 0.826 | 193 | 0.00284 | 47 | 0.0331 | 229 |
46 | 557 | Hs.147189 | CTDSPL | 10 | 12 | 2.03 | 59 | 3 | 152 | 0.895 | 67 | 1.093 | 106 | 0.00372 | 59 | 0.011 | 114 |
47 | 562 | Hs.374588 | RPL17 | 10 | 12 | 1.42 | 243 | 1 | 6 | 0.791 | 113 | 1.019 | 120 | 0.000978 | 17 | 0.00509 | 63 |
48 | 567 |   | failed to sequence | 9 | 10 | 1.35 | 324 | 3 | 152 | 1.107 | 22 | 2.364 | 17 | 0.00252 | 45 | 0.000351 | 7 |
49 | 571 | Hs.401929 | RPL10 | 10 | 12 | 1.48 | 186 | 3 | 152 | 0.86 | 77 | 1.362 | 69 | 0.00242 | 39 | 0.00329 | 48 |
50 | 576 | Hs.81008 | FLNB | 10 | 11 | 1.58 | 134 | 3 | 152 | 0.822 | 93 | 1.313 | 74 | 0.00485 | 79 | 0.003 | 44 |
51 | 579 | Hs.437178 | ACADVL | 10 | 12 | 1.53 | 155 | 3 | 152 | 0.809 | 100 | 1.282 | 80 | 0.00301 | 50 | 0.0028 | 42 |
52 | 584 | Hs.419640 | PARK7 | 10 | 12 | 1.6 | 123 | 3 | 152 | 0.846 | 85 | 1.115 | 102 | 0.000978 | 17 | 0.00919 | 105 |
53 | 585 | Hs.250895 | RPL34 | 8 | 10 | 1.46 | 203 | 3 | 152 | 0.909 | 57 | 1.634 | 41 | 0.00513 | 82 | 0.00354 | 50 |
54 | 594 | Hs.181350 | KLK2 | 10 | 12 | 3.08 | 17 | 2 | 48 | 0.824 | 91 | 0.775 | 220 | 0.000771 | 13 | 0.0266 | 205 |
55 | 596 | Hs.186350 | RPL4 | 10 | 12 | 1.53 | 156 | 3 | 152 | 0.806 | 102 | 1.281 | 81 | 0.00413 | 65 | 0.00264 | 40 |
56 | 597 | Hs.343667 | ELOVL5 | 10 | 12 | 1.79 | 75 | 4 | 361 | 0.927 | 53 | 1.586 | 42 | 0.00242 | 39 | 0.00187 | 27 |
57 | 601 | AF203815 | alpha gene | 10 | 12 | 2.26 | 41 | 3 | 152 | 0.789 | 116 | 1.073 | 110 | 0.00562 | 86 | 0.00857 | 96 |
58 | 610 |   | genomic 13q32.2 | 5 | 12 | 1.46 | 209 | 2 | 48 | 0.915 | 56 | 1.64 | 40 | 0.0153 | 168 | 0.00823 | 89 |
59 | 611 | AF203815 | alpha gene | 10 | 12 | 2.34 | 32 | 3 | 152 | 0.792 | 112 | 1.082 | 109 | 0.00835 | 114 | 0.00838 | 92 |
60 | 616 |   | genomic 3p21.31 | 8 | 12 | 1.34 | 345 | 2 | 48 | 0.907 | 58 | 1.413 | 61 | 0.00548 | 83 | 0.00163 | 21 |
61 | 634 | Hs.239155 | KCTD3 | 6 | 12 | 1.46 | 205 | 3 | 152 | 0.963 | 42 | 1.813 | 29 | 0.00573 | 91 | 0.011 | 115 |
62= | 643 |   | genomic 3q22.1 | 5 | 9 | 1.7 | 20 | 1 | 6 | 1.013 | 31 | 1.751 | 33 | 0.0329 | 281 | 0.0431 | 272 |
62= | 643 |   | failed to sequence | 10 | 12 | 2.67 | 166 | 3 | 152 | 0.851 | 83 | 1.101 | 104 | 0.00155 | 29 | 0.00981 | 109 |
62= | 643 | Hs.98669 | ADPRHL1 | 6 | 6 | 1.51 | 99 | 2 | 48 | 0.954 | 45 | 1.671 | 38 | 0.025 | 242 | 0.0211 | 171 |
65 | 649 | Hs.408200 | STEAP2 | 10 | 12 | 2.54 | 23 | 3 | 152 | 0.815 | 97 | 0.852 | 180 | 0.00138 | 28 | 0.0209 | 169 |
66= | 651 | Hs.356794 | RPS24 | 10 | 12 | 1.7 | 98 | 2 | 48 | 0.684 | 191 | 0.893 | 163 | 0.00458 | 72 | 0.00679 | 79 |
66= | 651 |   | genomic 2q31.3 | 9 | 12 | 1.49 | 176 | 3 | 152 | 0.896 | 66 | 1.375 | 66 | 0.0077 | 111 | 0.00688 | 80 |
66= | 651 |   | genomic 17p13.1 | 8 | 12 | 2.08 | 55 | 3 | 152 | 0.853 | 80 | 1.09 | 107 | 0.00381 | 63 | 0.0245 | 194 |
69= | 655 | Hs.254837 | SLC2A4RG | 5 | 11 | 1.29 | 433 | 1 | 6 | 1.169 | 17 | 2.725 | 9 | 0.00776 | 113 | 0.00676 | 77 |
69= | 655 |   | mitochondrial | 4 | 5 | 1.6 | 129 | 1 | 6 | 1.069 | 28 | 2.282 | 20 | 0.0275 | 255 | 0.0303 | 217 |
71 | 672 | Hs.171995 | KLK3 | 10 | 12 | 3.41 | 13 | 2 | 48 | 0.795 | 110 | 0.753 | 232 | 0.00372 | 59 | 0.0282 | 210 |
72= | 678 | Hs.80545 | RPL37 | 10 | 12 | 1.45 | 270 | 3 | 152 | 0.801 | 105 | 1.282 | 79 | 0.00242 | 39 | 0.00222 | 33 |
72= | 678 | Hs.469653 | RPL5 | 10 | 12 | 1.4 | 217 | 3 | 152 | 0.777 | 119 | 1.207 | 93 | 0.00372 | 59 | 0.00262 | 38 |
74 | 681 | Hs.211203 | RBM4 | 8 | 11 | 1.25 | 533 | 2 | 48 | 0.988 | 36 | 1.928 | 23 | 0.000957 | 16 | 0.00185 | 25 |
75 | 682 | Hs.25895 | JFC1 | 5 | 8 | 1.34 | 346 | 2 | 48 | 1.071 | 27 | 2.293 | 19 | 0.0128 | 152 | 0.00828 | 90 |
76 | 688 | Hs.435953 | SPON2 | 9 | 12 | 2.34 | 31 | 3 | 152 | 0.829 | 90 | 0.977 | 131 | 0.0077 | 111 | 0.0213 | 173 |
77 | 689 |   | failed to sequence | 9 | 12 | 2.16 | 49 | 2 | 48 | 0.758 | 131 | 0.793 | 214 | 0.000647 | 11 | 0.0337 | 236 |
78= | 690 | AF203815 | alpha gene | 5 | 11 | 3.84 | 11 | 1 | 6 | 0.971 | 39 | 1.351 | 71 | 0.0202 | 204 | 0.0751 | 359 |
78= | 690 | Hs.116467 | PRAC | 8 | 12 | 1.65 | 110 | 3 | 152 | 0.889 | 70 | 1.299 | 77 | 0.0122 | 146 | 0.0147 | 135 |
80 | 693 | Hs.409634 | RPL18 | 10 | 12 | 1.67 | 107 | 4 | 361 | 0.859 | 78 | 1.345 | 72 | 0.00123 | 23 | 0.00357 | 52 |
81 | 695 | Hs.66731 | HOXB13 | 9 | 12 | 1.33 | 355 | 2 | 48 | 0.956 | 44 | 1.432 | 58 | 0.00692 | 104 | 0.00739 | 86 |
82 | 695 |   | failed to sequence | 7 | 5 | 1.48 | 194 | 2 | 48 | 0.933 | 50 | 1.663 | 39 | 0.023 | 230 | 0.0146 | 134 |
83 | 717 |   | failed to sequence | 10 | 12 | 1.42 | 246 | 3 | 152 | 0.765 | 125 | 1.171 | 95 | 0.00334 | 56 | 0.00297 | 43 |
84 | 735 | Hs.275865 | B3GALT4 | 10 | 12 | 1.62 | 116 | 4 | 361 | 0.806 | 101 | 1.279 | 83 | 0.00194 | 33 | 0.00273 | 41 |
85 | 736 |   | failed to sequence | 6 | 11 | 1.47 | 200 | 2 | 48 | 0.905 | 60 | 1.536 | 45 | 0.0208 | 209 | 0.0215 | 174 |
86 | 741 | Hs.356794 | RPS24 | 10 | 12 | 1.54 | 151 | 4 | 361 | 0.838 | 87 | 1.369 | 68 | 0.00334 | 56 | 0.00132 | 18 |
87 | 746 |   | failed to sequence | 10 | 12 | 1.52 | 160 | 4 | 361 | 0.898 | 62 | 1.47 | 53 | 0.00686 | 97 | 0.00106 | 13 |
88= | 753 | Hs.425274 | RPL41 | 10 | 12 | 2.24 | 92 | 3 | 152 | 0.705 | 170 | 0.973 | 133 | 0.0092 | 122 | 0.00733 | 84 |
88= | 753 | Hs.159118 | AMD1 | 10 | 12 | 1.71 | 43 | 3 | 152 | 0.761 | 129 | 0.793 | 215 | 0.00123 | 23 | 0.024 | 191 |
90 | 754 | Hs.408073 | RPS6 | 4 | 11 | 1.72 | 90 | 2 | 48 | 0.874 | 72 | 1.517 | 48 | 0.0312 | 269 | 0.0328 | 227 |
91 | 767 | Hs.374588 | RPL17 | 10 | 12 | 1.48 | 184 | 4 | 361 | 0.836 | 88 | 1.374 | 67 | 0.00301 | 50 | 0.00131 | 17 |
92 | 773 | Hs.171995 | KLK3 | 10 | 11 | 8.73 | 4 | 3 | 152 | 0.823 | 92 | 0.72 | 249 | 0.0031 | 55 | 0.0313 | 221 |
93 | 776 | Hs.256583 | ILF3 | 5 | 12 | 1.41 | 252 | 2 | 48 | 0.874 | 73 | 1.523 | 47 | 0.0153 | 168 | 0.0236 | 188 |
94 | 781 |   | genomic 4p15.33 | 5 | 11 | 2.47 | 28 | 1 | 6 | 0.947 | 46 | 1.405 | 62 | 0.0361 | 298 | 0.067 | 341 |
95 | 800 |   | failed to sequence | 10 | 12 | 1.69 | 100 | 3 | 152 | 0.717 | 157 | 0.89 | 165 | 0.00686 | 97 | 0.0143 | 129 |
96 | 811 | failed | failed to sequence | 10 | 12 | 1.71 | 93 | 4 | 361 | 0.794 | 111 | 1.24 | 87 | 0.00835 | 114 | 0.00307 | 45 |
97 | 815 | Hs.406534 | HMG20B | 10 | 12 | 1.59 | 131 | 3 | 152 | 0.713 | 163 | 0.884 | 166 | 0.00458 | 72 | 0.0144 | 131 |
98 | 830 |   | mitochondrial | 9 | 12 | 1.6 | 122 | 4 | 361 | 0.803 | 104 | 1.211 | 92 | 0.00447 | 70 | 0.00715 | 81 |
99 | 836 | Hs.425274 | RPL41 | 10 | 11 | 1.72 | 88 | 2 | 48 | 0.644 | 233 | 0.822 | 197 | 0.0112 | 145 | 0.0127 | 125 |
100 | 840 | Hs.171995 | KLK3 | 10 | 8 | 12.03 | 3 | 2 | 48 | 0.762 | 127 | 0.598 | 313 | 0.00447 | 69 | 0.0456 | 280 |