Microarray Publications Database
Supplementary Data: Table 2B
Top 200 BRCA2 genotype predictor genes by SVM.
p Value | CloneID | Description | Locus | CytoBand |
---|---|---|---|---|
0.001103 | 198418 | Histone 1, H2bd | HIST1H2BD | 6p21.3 |
0.001128 | 25353 | Autoantigen | RCD-8 | 16q22.1 |
0.001146 | 259432 | FLJ46385 protein | FLJ46385 | 19q13.42 |
0.001243 | 66353 | NADH dehydrogenase (ubiquinone) 1, | NDUFC1 | 4q28.2-q31.1 |
0.001302 | 245076 | Hypothetical protein FLJ10241 | FLJ10241 | 19q13.2 |
0.001321 | 172421 | Transforming growth factor, alpha | TGFA | 2p13 |
0.001347 | 35093 | Dual specificity phosphatase 14 | DUSP14 | 17q12 |
0.0014 | 364825 |   |   |   |
0.001414 | 176543 | TAO kinase 2 | TAOK2 | 16p11.2 |
0.001462 | 137790 | Rho-related BTB domain containing 1 | RHOBTB1 | 10q21.2 |
0.001466 | 235923 | TBC1 domain family, member 10B | DKFZP434P1750 | 16p11.2 |
0.001475 | 259057 | HIV-1 rev binding protein 2 | HRB2 | 12q21.1 |
0.001484 | 1521302 |   |   |   |
0.001534 | 34575 | RNA binding protein S1, serine-rich domain | RNPS1 | 16p13.3 |
0.001537 | 27672 |   |   |   |
0.001579 | 167181 | Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) | UBE2G2 | 21q22.3 |
0.001585 | 122228 | Chromosome 20 open reading frame 19 | C20orf19 | 20pter-q11.23 |
0.001642 | 23658 | SET domain and mariner transposase fusion gene | SETMAR | 3p26.1 |
0.00001029 | 743828 | IGH mRNA for immunoglobulin heavy chain VHDJ region, |   |   |
0.00001246 | 148115 | Hypothetical protein FLJ10404 | FLJ10404 | 5q35.3 |
0.00002723 | 294283 | Ras association (RalGDS/AF-6) domain family 5 | RASSF5 | 1q32.1 |
0.00005723 | 37450 | Pyruvate dehydrogenase (lipoamide) alpha 1 | PDHA1 | Xp22.2-p22.1 |
0.0000868 | 757192 | Sideroflexin 2 | SFXN2 | 10q24.32 |
0.00009582 | 109278 | Dolichyl-phosphate mannosyltransferase polypeptide 3 | DPM3 | 1q22 |
0.0001105 | 50104 | Molybdenum cofactor synthesis 3 | MOCS3 | 20q13.13 |
0.000138 | 143365 | Hypothetical protein DKFZp761E198 | DKFZp761E198 | 11q13.1 |
0.0001566 | 230402 | Zinc finger and BTB domain containing 9 | ZBTB9 | 6p21.32 |
0.0002184 | 137645 | Full length insert cDNA YH97B03 |   |   |
0.000234 | 248261 | Glycine dehydrogenase (decarboxylating; glycine decarboxylase, | GLDC | 9p22 |
0.0002876 | 767065 | SRY (sex determining region Y)-box 10 | SOX10 | 22q13.1 |
0.0002879 | 24843 | Tripartite motif-containing 11 | TRIM11 | 1q42.13 |
0.0002974 | 265310 | Glutathione transferase zeta 1 | GSTZ1 | 14q24.3 |
0.0003332 | 1620974 | Chromosome 21 open reading frame 119 | C21orf119 | 21q22.11 |
0.0003514 | 298089 | Frataxin | FXN | 9q13-q21.1 |
0.000405 | 120599 | Breast carcinoma amplified sequence 3 | BCAS3 | 17q23 |
0.0005377 | 34092 | A kinase (PRKA) anchor protein 10 | AKAP10 | 17p11.1 |
0.0005483 | 111192 | Cytochrome c oxidase subunit VIc | COX6C | 8q22-q23 |
0.000571 | 767181 | Monooxygenase, DBH-like 1 | MOXD1 | 6q23.1-23.3 |
0.000626 | 302591 | Ras homolog gene family, member H | RHOH | 4p13 |
0.0006646 | 345561 | Pim-1 oncogene | PIM1 | 6p21.2 |
0.0006782 | 42426 | KIAA0652 gene product | KIAA0652 | 11p11.2 |
0.0006864 | 754026 | SMAD specific E3 ubiquitin protein ligase 2 | SMURF2 | 17q22-q23 |
0.0006994 | 49311 | Myeloid/lymphoid or mixed-lineage leukemia 2 | MLL2 | 12q12-q14 |
0.0007066 | 247281 | Bromodomain adjacent to zinc finger domain, 2B | BAZ2B | 2q23-q24 |
0.0007162 | 123033 | Yippee-like 4 (Drosophila) | YPEL4 | 11q12.1 |
0.0007169 | 39319 | Phosphatidylserine synthase 2 | PTDSS2 | 11p15 |
0.0008799 | 38606 | Hypothetical protein MGC3036 | MGC3036 | 7q31-q35 |
0.000912 | 754374 | Low density lipoprotein receptor-related protein 11 | LRP11 | 6q25.1 |
0.0009129 | 345724 | SVAP1 protein | IMAGE3451454 | 1q42.13 |
0.0009477 | 40017 | Cytochrome c, somatic | CYCS | 7p15.3 |
0.0009879 | 219955 | BTB (POZ) domain containing 14A | BTBD14A | 9q34.3 |
0.0009991 | 297963 |   |   |   |
0.001067 | 375839 | Glucocorticoid induced transcript 1 | GLCCI1 | 7p21.3 |
0.001089 | 202332 | Phosphodiesterase 2A, cGMP-stimulated | PDE2A | 11q13.4 |
0.001697 | 279007 | WD repeat domain 26 | WDR26 | 1q42.12 |
0.001761 | 346315 | Hypothetical protein H17 | H17 | 11q24.2 |
0.00179 | 39755 | SEC24 related gene family, member C (S. cerevisiae) | SEC24C | 10q22.2 |
0.001821 | 37582 | KIAA1161 | KIAA1161 | 9p13.3 |
0.001831 | 125314 | Chromosome 1 open reading frame 2 | C1orf2 | 1q21 |
0.001847 | 27692 | Chromosome 19 open reading frame 25 | C19orf25 | 19p13.3 |
0.001927 | 1391653 | KIAA0792 | KIAA0792 | 1q42.12 |
0.001969 | 28543 | Exonuclease NEF-sp | LOC81691 | 16p12.3 |
0.001974 | 47664 | Inhibitor of growth family, member 3 | ING3 | 7q31 |
0.002003 | 739191 | Zinc finger protein 261 | ZNF261 | Xq13.1 |
0.002004 | 154682 | Fibrosin 1 | FBS1 | 16p11.2 |
0.002052 | 471624 | Zinc finger, A20 domain containing 3 | ZA20D3 | 15q25.1 |
0.002052 | 241051 | Guanosine monophosphate reductase 2 | GMPR2 | 14q11.2 |
0.002279 | 234421 | Signal-transducing adaptor protein-2 | STAP2 | 19p13.3 |
0.002281 | 34505 | Syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component) | SNTA1 | 20q11.2 |
0.002286 | 1585013 | Chromosome 16 open reading frame 28 | C16orf28 | 16p13.3 |
0.002389 | 125211 | 5,10-methylenetetrahydrofolate reductase (NADPH) | MTHFR | 1p36.3 |
0.002411 | 48629 | Polymerase (DNA directed), beta | POLB | 8p11.2 |
0.002466 | 143624 |   |   |   |
0.002498 | 297249 | Zinc finger protein 403 | ZNF403 | 17q12 |
0.002591 | 756885 | Hypothetical protein BC002926 | LOC90379 | 19p13.12 |
0.002644 | 204264 | Retinoic acid receptor responder (tazarotene induced) 2 | RARRES2 | 7q36.1 |
0.002659 | 49383 | G protein-coupled receptor kinase 6 | GRK6 | 5q35 |
0.00268 | 234314 | Apolipoprotein C-I | APOC1 | 19q13.2 |
0.002682 | 148297 | F-box protein 22 | FBXO22 | 15q23 |
0.002689 | 151261 | XTP3-transactivated protein A | XTP3TPA | 16p11.2 |
0.002752 | 144928 | Intracisternal A particle-promoted polypeptide | IPP | 1p34-p32 |
0.002787 | 214921 | Insulin receptor | INSR | 19p13.3-p13.2 |
0.002863 | 294922 | Regulator of G-protein signalling 14 | RGS14 | 5q35.3 |
0.002872 | 26467 | Platelet-activating factor acetylhydrolase, isoform Ib, g | PAFAH1B3 | 19q13.1 |
0.002896 | 229425 | Diacylglycerol O-acyltransferase homolog 2 (mouse) | DGAT2 | 11q13.5 |
0.002916 | 34554 | COMM domain containing 5 | COMMD5 | 8q24-qter |
0.002952 | 111840 | ProSAPiP1 protein | ProSAPiP1 | 20p13 |
0.002954 | 300868 | Poly(A) binding protein, nuclear 1 | PABPN1 | 14q11.2-q13 |
0.002973 | 173169 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, | SMARCA4 | 19p13.2 |
0.00308 | 162681 | Keratin 14 (epidermolysis bullosa simplex, Dowling-Meara, | KRT14 | 17q12-q21 |
0.003127 | 44186 | Isovaleryl Coenzyme A dehydrogenase | IVD | 15q14-q15 |
0.00315 | 281898 | Differential display and activated by p53 | DDA3 | 1p13.3 |
0.003174 | 343908 | Ring finger protein 113A | ZNF183 | Xq25-q26 |
0.00318 | 48277 | Armadillo repeat containing 7 | ARMC7 | 17q25.1 |
0.003183 | 234908 | Legumain | LGMN | 14q32.1 |
0.003319 | 43729 | LUC7-like 2 (S. cerevisiae) | LUC7L2 | 7q34 |
0.003425 | 341246 | ClpP caseinolytic protease, ATP-dependent, | CLPP | 19p13.3 |
0.003466 | 811101 | SH3 multiple domains 2 | SH3MD2 | 4q32.3-q33 |
0.00352 | 743353 | Polymerase (DNA-directed), epsilon 4 (p12 subunit) | POLE4 | 2p12 |
0.003608 | 243736 | Stromal membrane-associated protein 1-like | LOC64744 | 1p35.3-p34.1 |
0.003648 | 154027 | Ribonuclease T2 | RNASET2 | 6q27 |
0.003653 | 760147 | Glyceronephosphate O-acyltransferase | GNPAT | 1q42.11-42.3 |
0.003688 | 159475 | Dishevelled, dsh homolog 3 (Drosophila) | DVL3 | 3q27 |
0.003711 | 1519748 | Phosphogluconate dehydrogenase | PGD | 1p36.3-p36.13 |
0.003802 | 23509 | Superkiller viralicidic activity 2-like 2 (S. cerevisiae) | KIAA0052 | 5q11.2 |
0.003816 | 724339 | CDNA clone IMAGE:6250506 |   |   |
0.004101 | 327307 | LAS1-like (S. cerevisiae) | FLJ12525 | Xq12-q13 |
0.00415 | 124726 | SEC13-like 1 (S. cerevisiae) | SEC13L1 | 3p25-p24 |
0.004193 | 754208 | Kinesin family member 1B | KIF1B | 1p36.2 |
0.004239 | 195333 | HECT domain containing 1 | HECTD1 | 14q12 |
0.004252 | 142431 | Chromosome 2 open reading frame 3 | C2orf3 | 2p11.2-p11.1 |
0.004307 | 341211 | Similar to bK246H3.1 (immunoglobulin lambda-like polypeptide 1, | LOC91316 | 22q11.23 |
0.004319 | 111044 | TBC1 domain family, member 7 | TBC1D7 | 6p24.1 |
0.004325 | 120460 | Chromosome 11 open reading frame 1 | C11orf1 | 11q13-q22 |
0.004491 | 146520 | Early B-cell factor | EBF | 5q34 |
0.004648 | 37496 | RUN and TBC1 domain containing 3 | RUTBC3 | 22q13.1-q13.2 |
0.00476 | 1839589 | Solute carrier family 35, member A5 | SLC35A5 | 3q13.2 |
0.004782 | 111647 | EGF-containing fibulin-like extracellular matrix protein 1 | EFEMP1 | 2p16 |
0.004797 | 247903 | Cytochrome c oxidase subunit Vb | COX5B | 2cen-q13 |
0.004808 | 35661 | Protein phosphatase 2, regulatory subunit B (B56), | PPP2R5B | 11q12-q13 |
0.004827 | 229734 | Hypothetical protein BC015088 | MGC16471 | 3p25.2 |
0.004878 | 143821 | DEAH (Asp-Glu-Ala-His) box polypeptide 29 | DHX29 | 5q11.2 |
0.00488 | 305943 | Mediator of DNA damage checkpoint 1 | MDC1 | 6pter-p21.31 |
0.004882 | 728613 | Importin 4 | IPO4 | 14q11.2 |
0.004882 | 51372 | Cytoplasmic linker associated protein 2 | CLASP2 | 3p23 |
0.004954 | 786519 | Fibrillin 2 (congenital contractural arachnodactyly) | FBN2 | 5q23-q31 |
0.005003 | 137793 | Pre-B-cell leukemia transcription factor 1 | PBX1 | 1q23 |
0.005208 | 194621 | Hypothetical protein DKFZp762E1312 | DKFZp762E1312 | 2q37.1 |
0.00524 | 759949 | Phospholipid scramblase 3 | PLSCR3 | 17p13.1 |
0.005242 | 27009 | Protein kinase C, beta 1 | PRKCB1 | 16p11.2 |
0.005343 | 257329 | Cytidine monophosphate-N-acetylneuraminic acid hydroxylase (CMP-N-acetylneuraminate monooxygenase) | CMAH | 6p21.32 |
0.005345 | 730942 | 2,4-dienoyl CoA reductase 2, peroxisomal | DECR2 | 16p13.3 |
0.005348 | 362150 | Cyclin M4 | CNNM4 | 2p12-p11.2 |
0.005458 | 30228 | Transcobalamin II; macrocytic anemia | TCN2 | 22q12.2 |
0.005474 | 51583 | Serine hydroxymethyltransferase 2 (mitochondrial) | SHMT2 | 12q12-q14 |
0.005495 | 2307119 | Inositol polyphosphate-4-phosphatase, type I, 107kDa | INPP4A | 2q11.2 |
0.005499 | 214751 |   |   |   |
0.005553 | 300683 | Williams Beuren syndrome chromosome region 18 | WBSCR18 | 7q11.23 |
0.005692 | 1408443 | Chromosome 7 open reading frame 13 | C7orf13 |   |
0.005766 | 33438 | TAF6 RNA polymerase II, TATA box binding protein | TAF6 | 7q22.1 |
0.005811 | 40148 | ATP synthase, H+ transporting, mitochondrial F0 complex | ATP5L | 11q23.3 |
0.005851 | 48458 | Mitochondrial ribosomal protein L28 | MRPL28 | 16p13.3 |
0.005939 | 121133 | DNA polymerase-transactivated protein 6 | DNAPTP6 | 2q33.1 |
0.005966 | 230202 | Zinc finger protein 347 | ZNF347 | 19q13.42 |
0.005976 | 125300 | Hypothetical protein MGC4308 | MGC4308 | 3q12.1 |
0.006108 | 40959 | Solute carrier family 25 | SLC25A5 | Xq24-q26 |
0.006325 | 123756 | Haloacid dehalogenase-like hydrolase domain containing 3 | HDHD3 | 9q32 |
0.006337 | 230988 | E2F transcription factor 3 | E2F3 | 6p22 |
0.006377 | 128041 | WD repeat domain 40A | WDR40A | 9p13.3 |
0.006527 | 242065 | KIAA0649 | KIAA0649 | 9q34.3 |
0.006562 | 121209 | CDNA FLJ42255 fis, clone TKIDN2009889 |   |   |
0.006702 | 126739 | NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa | NDUFV2 | 18p11.31-p11.2 |
0.006734 | 1625395 | Transcribed locus |   |   |
0.006754 | 35298 | Ectodermal-neural cortex (with BTB-like domain) | ENC1 | 5q12-q13.3 |
0.00677 | 147139 | KIAA0460 | KIAA0460 | 1q21.2 |
0.00681 | 135500 | Solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 | SLC7A2 | 8p22-p21.3 |
0.006994 | 167041 | ATP-binding cassette, sub-family B (MDR/TAP), member 8 | ABCB8 | 7q36 |
0.007077 | 276081 | Mlx interactor | MONDOA | 12q21.31 |
0.007168 | 26474 | V-fos FBJ murine osteosarcoma viral oncogene homolog | FOS | 14q24.3 |
0.007287 | 755531 | Hypothetical protein MGC61550 | MGC61550 | 15q26.1 |
0.007308 | 41249 | Component of oligomeric golgi complex 7 | COG7 | 16p12.1 |
0.007323 | 165908 | Transcription factor-like 1 | TCFL1 | 1q21 |
0.0074 | 1643889 | GTPase activating Rap/RanGAP domain-like 1 | MGC45564 | 9q31 |
0.007635 | 241175 | KIAA0776 | KIAA0776 | 6q16.1 |
0.007855 | 34810 | Fuse-binding protein-interacting repressor | SIAHBP1 | 8q24.2-qtel |
0.007909 | 234212 | Apolipoprotein H (beta-2-glycoprotein I) | APOH | 17q23-qter |
0.007983 | 1234285 | Motile sperm domain containing 2 | MOSPD2 | Xp22.2 |
0.008043 | 897597 | Gem (nuclear organelle) associated protein 4 | GEMIN4 | 17p13 |
0.008061 | 297430 | Cyclin-dependent kinase inhibitor 1B (p27, Kip1) | CDKN1B | 12p13.1-p12 |
0.008167 | 35514 | Zinc finger protein 384 | ZNF384 |   |
0.008215 | 1659486 | Similar to ribosomal protein L17 |   | 19p13.2 |
0.008218 | 753991 | MOCO sulphurase C-terminal domain containing 1 | FLJ22390 | 1q41 |
0.00823 | 814595 | Protein kinase C binding protein 1 | PRKCBP1 | 20q13.12 |
0.008418 | 1637694 | Glycolipid transfer protein | GLTP | 12q24.11 |
0.008498 | 307696 | KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 | KDELR3 | 22q13.1 |
0.008832 | 210713 | Kinesin family member 22 | KIF22 | 16p11.2 |
0.008904 | 122062 | Eukaryotic translation initiation factor 4E binding protein 2 | EIF4EBP2 | 10q21-q22 |
0.008957 | 140791 | Synaptosomal-associated protein, 29kDa | SNAP29 | 22q11.21 |
0.008981 | 156431 | Ciliary neurotrophic factor receptor | CNTFR | 9p13 |
0.009051 | 143112 | Chondroitin beta1,4 N-acetylgalactosaminyltransferase | ChGn | 8p21.3 |
0.009066 | 324844 | Mitofusin 1 | MFN1 | 3q26.32 |
0.009083 | 30786 | P450 (cytochrome) oxidoreductase | POR | 7q11.2 |
0.009179 | 35650 | Male sterility domain containing 2 | MLSTD2 | 11p15.2 |
0.009265 | 742869 | Unc-119 homolog (C. elegans) | UNC119 | 17q11.2 |
0.009267 | 40887 | Lunatic fringe homolog (Drosophila) | LFNG | 7p22 |
0.009293 | 730965 | UPF3 regulator of nonsense transcripts homolog A (yeast) | UPF3A | 13q34 |
0.009316 | 242009 | Cytochrome P450, family 3, subfamily A, polypeptide 7 | CYP3A7 | 7q21-q22.1 |
0.009346 | 293431 | Leucine rich repeat containing 44 | MGC22773 | 1p31.1 |
0.009456 | 1650040 | FLJ40411 protein | FLJ40411 | 2q37.3 |
0.009554 | 301114 | Latrophilin 1 | LPHN1 | 19p13.2 |
0.009648 | 156326 | Hypothetical protein FLJ13848 | FLJ13848 | 11q13.1 |
0.009691 | 29720 | Protein tyrosine phosphatase, receptor type, N polypeptide 2 | PTPRN2 | 7q36 |
0.00982 | 297158 | CAMP responsive element binding protein 3-like 2 | CREB3L2 | 7q34 |
0.009876 | 385031 | CDNA: FLJ22133 fis, clone HEP20529 |   |   |
0.009951 | 66327 | Complement component (3b/4b) receptor 1-like | CR1L | 1q32.1 |
0.009972 | 125614 |   |   |   |
0.01009 | 48631 | Potassium voltage-gated channel, shaker-related subfamily, | KCNAB2 | 1p36.3 |
0.01015 | 293430 | Complement component (3b/4b) receptor 1, | CR1 | 1q32 |
0.01026 | 140997 | Growth differentiation factor 15 | GDF15 | 19p13.1-13.2 |
0.01034 | 782633 | Cylindromatosis (turban tumor syndrome) | CYLD | 16q12-q13 |